Last code update: Feb 8, 202s4

User Inputs

source directory: /Users/nalbistami/Gladstone Dropbox/Noura Al Bistami/AALS Shared DropBox/GEDI Analysis/Combined Experiments/CombinedC9orf72/Cell line compare (manuscript)
output directory: /Users/nalbistami/Gladstone Dropbox/Noura Al Bistami/AALS Shared DropBox/GEDI Analysis/Combined Experiments/CombinedC9orf72/Cell line compare (manuscript)

drug: FALSE
drug kept: None
line kept: 0YX7iCTR, 2AE8iCTR, BUUiALS, 6ZLDiALS

multiple_experiments: TRUE
multiple_plates <- FALSE

compare_cellline <- TRUE
compare_class <- FALSE
compare_drug <-FALSE

reference conditions:

## 
## 
## |Experiment |Plate |CellLine | sum_live| sum_dead|
## |:----------|:-----|:--------|--------:|--------:|
## |Set26      |NA    |0YX7iCTR |    22460|      665|
## |Set26      |NA    |2AE8iCTR |    14628|      756|
## |Set26      |NA    |BUUiALS  |    12712|      775|
## |Set29      |NA    |2AE8iCTR |     5463|      350|
## |Set29      |NA    |6ZLDiALS |     7229|      351|
## |Set29      |NA    |BUUiALS  |     9774|      276|
## |Set30      |NA    |0YX7iCTR |     1409|      144|
## |Set30      |NA    |2AE8iCTR |     1670|      148|
## |Set30      |NA    |6ZLDiALS |      695|       97|
## |Set30      |NA    |BUUiALS  |     1813|      119|
## |Set32      |NA    |2AE8iCTR |     1927|      118|
## |Set32      |NA    |6ZLDiALS |      588|      269|
## |Set32      |NA    |BUUiALS  |      987|      174|
## |Set33      |NA    |0YX7iCTR |      986|       24|
## |Set33      |NA    |BUUiALS  |     8449|      339|
## |Set34      |NA    |0YX7iCTR |     1784|      112|
## |Set34      |NA    |BUUiALS  |     2177|       75|
## |Set35      |NA    |0YX7iCTR |     2274|       69|
## |Set35      |NA    |BUUiALS  |     9077|      348|
## |Set36      |NA    |2AE8iCTR |    30438|      412|
## |Set36      |NA    |6ZLDiALS |     3897|      497|
## |Set40      |NA    |0YX7iCTR |    52680|     4734|
## |Set40      |NA    |6ZLDiALS |     2945|     2454|
## |Set40      |NA    |BUUiALS  |    15073|     3233|
## |Set44      |NA    |0YX7iCTR |     7678|      957|
## |Set44      |NA    |6ZLDiALS |      869|      770|
## |Set44      |NA    |BUUiALS  |      942|      462|
## |Set45      |NA    |0YX7iCTR |    26083|     1432|
## |Set45      |NA    |6ZLDiALS |    27504|     1178|
## |Set51      |NA    |0YX7iCTR |     8098|      831|
## |Set51      |NA    |6ZLDiALS |     7716|     1271|
## |Set52      |NA    |0YX7iCTR |     2393|     1241|
## |Set52      |NA    |6ZLDiALS |      855|     2003|
## |set57      |NA    |0YX7iCTR |     9115|     1044|
## |set57      |NA    |6ZLDiALS |     4576|     2345|
## |set58      |NA    |0YX7iCTR |     2456|       84|
## |set58      |NA    |6ZLDiALS |     5988|      255|
## |set59      |NA    |0YX7iCTR |     3144|      529|
## |set59      |NA    |6ZLDiALS |     1653|      411|
## 
## 
## |Experiment |Plate |CellLine |Timepoint |Hour | sum_live| sum_dead|
## |:----------|:-----|:--------|:---------|:----|--------:|--------:|
## |Set26      |NA    |0YX7iCTR |1         |0    |     2991|       57|
## |Set26      |NA    |0YX7iCTR |2         |24   |     3209|       49|
## |Set26      |NA    |0YX7iCTR |3         |48   |     3186|       45|
## |Set26      |NA    |0YX7iCTR |4         |72   |     3081|       60|
## |Set26      |NA    |0YX7iCTR |5         |96   |     3063|       67|
## |Set26      |NA    |0YX7iCTR |6         |120  |     2439|      119|
## |Set26      |NA    |0YX7iCTR |7         |144  |     2180|      156|
## |Set26      |NA    |0YX7iCTR |8         |168  |     2311|      112|
## |Set26      |NA    |2AE8iCTR |1         |0    |     2018|       69|
## |Set26      |NA    |2AE8iCTR |2         |24   |     2366|       53|
## |Set26      |NA    |2AE8iCTR |3         |48   |     2260|       55|
## |Set26      |NA    |2AE8iCTR |4         |72   |     2040|       62|
## |Set26      |NA    |2AE8iCTR |5         |96   |     1995|       80|
## |Set26      |NA    |2AE8iCTR |6         |120  |     1405|      121|
## |Set26      |NA    |2AE8iCTR |7         |144  |     1184|      157|
## |Set26      |NA    |2AE8iCTR |8         |168  |     1360|      159|
## |Set26      |NA    |BUUiALS  |1         |0    |     1874|      121|
## |Set26      |NA    |BUUiALS  |2         |24   |     1946|       64|
## |Set26      |NA    |BUUiALS  |3         |48   |     1900|       61|
## |Set26      |NA    |BUUiALS  |4         |72   |     1738|       60|
## |Set26      |NA    |BUUiALS  |5         |96   |     1736|       55|
## |Set26      |NA    |BUUiALS  |6         |120  |     1242|      129|
## |Set26      |NA    |BUUiALS  |7         |144  |     1092|      167|
## |Set26      |NA    |BUUiALS  |8         |168  |     1184|      118|
## |Set29      |NA    |2AE8iCTR |1         |0    |     1201|       47|
## |Set29      |NA    |2AE8iCTR |2         |24   |      931|       37|
## |Set29      |NA    |2AE8iCTR |3         |48   |     1091|       35|
## |Set29      |NA    |2AE8iCTR |6         |120  |      678|       68|
## |Set29      |NA    |2AE8iCTR |7         |144  |      780|       86|
## |Set29      |NA    |2AE8iCTR |8         |168  |      782|       77|
## |Set29      |NA    |6ZLDiALS |1         |0    |     1351|       41|
## |Set29      |NA    |6ZLDiALS |2         |24   |     1256|       41|
## |Set29      |NA    |6ZLDiALS |3         |48   |     1358|       47|
## |Set29      |NA    |6ZLDiALS |6         |120  |      941|       84|
## |Set29      |NA    |6ZLDiALS |7         |144  |     1143|       66|
## |Set29      |NA    |6ZLDiALS |8         |168  |     1180|       72|
## |Set29      |NA    |BUUiALS  |1         |0    |     1806|       42|
## |Set29      |NA    |BUUiALS  |2         |24   |     1540|       35|
## |Set29      |NA    |BUUiALS  |3         |48   |     1696|       37|
## |Set29      |NA    |BUUiALS  |6         |120  |     1498|       52|
## |Set29      |NA    |BUUiALS  |7         |144  |     1595|       46|
## |Set29      |NA    |BUUiALS  |8         |168  |     1639|       64|
## |Set30      |NA    |0YX7iCTR |1         |0    |      111|       18|
## |Set30      |NA    |0YX7iCTR |2         |24   |      122|       17|
## |Set30      |NA    |0YX7iCTR |3         |48   |      139|       15|
## |Set30      |NA    |0YX7iCTR |4         |72   |      151|       15|
## |Set30      |NA    |0YX7iCTR |5         |96   |      149|       14|
## |Set30      |NA    |0YX7iCTR |6         |120  |      188|       17|
## |Set30      |NA    |0YX7iCTR |7         |144  |      188|       11|
## |Set30      |NA    |0YX7iCTR |8         |168  |      185|       21|
## |Set30      |NA    |0YX7iCTR |9         |192  |      176|       16|
## |Set30      |NA    |2AE8iCTR |1         |0    |       62|       20|
## |Set30      |NA    |2AE8iCTR |2         |24   |      106|       32|
## |Set30      |NA    |2AE8iCTR |3         |48   |      109|       24|
## |Set30      |NA    |2AE8iCTR |4         |72   |      181|       21|
## |Set30      |NA    |2AE8iCTR |5         |96   |      215|       15|
## |Set30      |NA    |2AE8iCTR |6         |120  |      288|       14|
## |Set30      |NA    |2AE8iCTR |7         |144  |      236|        4|
## |Set30      |NA    |2AE8iCTR |8         |168  |      252|        5|
## |Set30      |NA    |2AE8iCTR |9         |192  |      221|       13|
## |Set30      |NA    |6ZLDiALS |1         |0    |       32|        9|
## |Set30      |NA    |6ZLDiALS |2         |24   |       48|       13|
## |Set30      |NA    |6ZLDiALS |3         |48   |       63|       16|
## |Set30      |NA    |6ZLDiALS |4         |72   |       87|        8|
## |Set30      |NA    |6ZLDiALS |5         |96   |       83|        5|
## |Set30      |NA    |6ZLDiALS |6         |120  |       89|        9|
## |Set30      |NA    |6ZLDiALS |7         |144  |       91|       12|
## |Set30      |NA    |6ZLDiALS |8         |168  |      105|        8|
## |Set30      |NA    |6ZLDiALS |9         |192  |       97|       17|
## |Set30      |NA    |BUUiALS  |1         |0    |      120|        7|
## |Set30      |NA    |BUUiALS  |2         |24   |      124|       14|
## |Set30      |NA    |BUUiALS  |3         |48   |      159|       15|
## |Set30      |NA    |BUUiALS  |4         |72   |      188|       10|
## |Set30      |NA    |BUUiALS  |5         |96   |      203|       14|
## |Set30      |NA    |BUUiALS  |6         |120  |      238|       12|
## |Set30      |NA    |BUUiALS  |7         |144  |      258|       21|
## |Set30      |NA    |BUUiALS  |8         |168  |      269|       14|
## |Set30      |NA    |BUUiALS  |9         |192  |      254|       12|
## |Set32      |NA    |2AE8iCTR |1         |0    |      157|       10|
## |Set32      |NA    |2AE8iCTR |2         |24   |      187|       13|
## |Set32      |NA    |2AE8iCTR |3         |48   |      238|       16|
## |Set32      |NA    |2AE8iCTR |4         |72   |      249|        7|
## |Set32      |NA    |2AE8iCTR |5         |96   |      287|       15|
## |Set32      |NA    |2AE8iCTR |6         |120  |      269|       17|
## |Set32      |NA    |2AE8iCTR |7         |144  |      243|       23|
## |Set32      |NA    |2AE8iCTR |8         |168  |      297|       17|
## |Set32      |NA    |6ZLDiALS |1         |0    |       58|       26|
## |Set32      |NA    |6ZLDiALS |2         |24   |       47|       33|
## |Set32      |NA    |6ZLDiALS |3         |48   |       75|       30|
## |Set32      |NA    |6ZLDiALS |4         |72   |       80|       35|
## |Set32      |NA    |6ZLDiALS |5         |96   |       81|       43|
## |Set32      |NA    |6ZLDiALS |6         |120  |       78|       34|
## |Set32      |NA    |6ZLDiALS |7         |144  |       82|       34|
## |Set32      |NA    |6ZLDiALS |8         |168  |       87|       34|
## |Set32      |NA    |BUUiALS  |1         |0    |       91|       13|
## |Set32      |NA    |BUUiALS  |2         |24   |      122|       16|
## |Set32      |NA    |BUUiALS  |3         |48   |      142|       17|
## |Set32      |NA    |BUUiALS  |4         |72   |      154|       17|
## |Set32      |NA    |BUUiALS  |5         |96   |      137|       33|
## |Set32      |NA    |BUUiALS  |6         |120  |       74|       13|
## |Set32      |NA    |BUUiALS  |7         |144  |      125|       30|
## |Set32      |NA    |BUUiALS  |8         |168  |      142|       35|
## |Set33      |NA    |0YX7iCTR |1         |0    |      185|        3|
## |Set33      |NA    |0YX7iCTR |2         |24   |      203|        4|
## |Set33      |NA    |0YX7iCTR |5         |96   |      204|        5|
## |Set33      |NA    |0YX7iCTR |6         |120  |      194|        7|
## |Set33      |NA    |0YX7iCTR |8         |168  |      200|        5|
## |Set33      |NA    |BUUiALS  |1         |0    |     1934|       94|
## |Set33      |NA    |BUUiALS  |2         |24   |     1918|       76|
## |Set33      |NA    |BUUiALS  |5         |96   |     1999|       65|
## |Set33      |NA    |BUUiALS  |6         |120  |     1766|       55|
## |Set33      |NA    |BUUiALS  |8         |168  |      832|       49|
## |Set34      |NA    |0YX7iCTR |1         |0    |      415|       23|
## |Set34      |NA    |0YX7iCTR |6         |120  |      453|       22|
## |Set34      |NA    |0YX7iCTR |7         |144  |      460|       33|
## |Set34      |NA    |0YX7iCTR |8         |168  |      456|       34|
## |Set34      |NA    |BUUiALS  |1         |0    |      497|       26|
## |Set34      |NA    |BUUiALS  |6         |120  |      563|       15|
## |Set34      |NA    |BUUiALS  |7         |144  |      562|       13|
## |Set34      |NA    |BUUiALS  |8         |168  |      555|       21|
## |Set35      |NA    |0YX7iCTR |1         |0    |      446|        7|
## |Set35      |NA    |0YX7iCTR |2         |24   |      485|        7|
## |Set35      |NA    |0YX7iCTR |3         |48   |      437|       10|
## |Set35      |NA    |0YX7iCTR |4         |72   |      357|       11|
## |Set35      |NA    |0YX7iCTR |5         |96   |      296|       13|
## |Set35      |NA    |0YX7iCTR |6         |120  |      253|       21|
## |Set35      |NA    |BUUiALS  |1         |0    |     1283|       23|
## |Set35      |NA    |BUUiALS  |2         |24   |     1421|       33|
## |Set35      |NA    |BUUiALS  |3         |48   |     1683|       62|
## |Set35      |NA    |BUUiALS  |4         |72   |     1619|       70|
## |Set35      |NA    |BUUiALS  |5         |96   |     1565|       82|
## |Set35      |NA    |BUUiALS  |6         |120  |     1506|       78|
## |Set36      |NA    |2AE8iCTR |1         |0    |     3746|       29|
## |Set36      |NA    |2AE8iCTR |2         |24   |     4034|       29|
## |Set36      |NA    |2AE8iCTR |3         |48   |     3723|       37|
## |Set36      |NA    |2AE8iCTR |4         |72   |     3863|       59|
## |Set36      |NA    |2AE8iCTR |5         |96   |     4025|       74|
## |Set36      |NA    |2AE8iCTR |6         |120  |     3961|       77|
## |Set36      |NA    |2AE8iCTR |7         |144  |     3573|       52|
## |Set36      |NA    |2AE8iCTR |8         |168  |     3513|       55|
## |Set36      |NA    |6ZLDiALS |1         |0    |      367|       21|
## |Set36      |NA    |6ZLDiALS |2         |24   |      470|       51|
## |Set36      |NA    |6ZLDiALS |3         |48   |      516|       35|
## |Set36      |NA    |6ZLDiALS |4         |72   |      557|       57|
## |Set36      |NA    |6ZLDiALS |5         |96   |      554|       87|
## |Set36      |NA    |6ZLDiALS |6         |120  |      527|       88|
## |Set36      |NA    |6ZLDiALS |7         |144  |      506|       78|
## |Set36      |NA    |6ZLDiALS |8         |168  |      400|       80|
## |Set40      |NA    |0YX7iCTR |1         |0    |     4891|      235|
## |Set40      |NA    |0YX7iCTR |2         |24   |     5540|      413|
## |Set40      |NA    |0YX7iCTR |3         |48   |     5770|      441|
## |Set40      |NA    |0YX7iCTR |4         |72   |     6004|      474|
## |Set40      |NA    |0YX7iCTR |5         |96   |     5927|      493|
## |Set40      |NA    |0YX7iCTR |6         |120  |     5993|      594|
## |Set40      |NA    |0YX7iCTR |7         |144  |     6053|      600|
## |Set40      |NA    |0YX7iCTR |8         |168  |     6200|      699|
## |Set40      |NA    |0YX7iCTR |9         |192  |     6302|      785|
## |Set40      |NA    |6ZLDiALS |1         |0    |      420|      330|
## |Set40      |NA    |6ZLDiALS |2         |24   |      323|      349|
## |Set40      |NA    |6ZLDiALS |3         |48   |      299|      332|
## |Set40      |NA    |6ZLDiALS |4         |72   |      321|      242|
## |Set40      |NA    |6ZLDiALS |5         |96   |      290|      253|
## |Set40      |NA    |6ZLDiALS |6         |120  |      294|      206|
## |Set40      |NA    |6ZLDiALS |7         |144  |      335|      235|
## |Set40      |NA    |6ZLDiALS |8         |168  |      335|      250|
## |Set40      |NA    |6ZLDiALS |9         |192  |      328|      257|
## |Set40      |NA    |BUUiALS  |1         |0    |     2596|      485|
## |Set40      |NA    |BUUiALS  |2         |24   |     2133|      491|
## |Set40      |NA    |BUUiALS  |3         |48   |     1892|      377|
## |Set40      |NA    |BUUiALS  |4         |72   |     1777|      324|
## |Set40      |NA    |BUUiALS  |5         |96   |     1492|      305|
## |Set40      |NA    |BUUiALS  |6         |120  |     1394|      328|
## |Set40      |NA    |BUUiALS  |7         |144  |     1256|      314|
## |Set40      |NA    |BUUiALS  |8         |168  |     1286|      311|
## |Set40      |NA    |BUUiALS  |9         |192  |     1247|      298|
## |Set44      |NA    |0YX7iCTR |1         |0    |      800|      291|
## |Set44      |NA    |0YX7iCTR |2         |24   |     1836|      117|
## |Set44      |NA    |0YX7iCTR |3         |48   |     1785|       88|
## |Set44      |NA    |0YX7iCTR |4         |72   |     1721|      116|
## |Set44      |NA    |0YX7iCTR |5         |96   |      803|      192|
## |Set44      |NA    |0YX7iCTR |8         |168  |      733|      153|
## |Set44      |NA    |6ZLDiALS |1         |0    |      125|      272|
## |Set44      |NA    |6ZLDiALS |2         |24   |      239|      142|
## |Set44      |NA    |6ZLDiALS |3         |48   |      221|       76|
## |Set44      |NA    |6ZLDiALS |4         |72   |      151|       84|
## |Set44      |NA    |6ZLDiALS |5         |96   |       82|      102|
## |Set44      |NA    |6ZLDiALS |8         |168  |       51|       94|
## |Set44      |NA    |BUUiALS  |1         |0    |      123|      173|
## |Set44      |NA    |BUUiALS  |2         |24   |      272|       79|
## |Set44      |NA    |BUUiALS  |3         |48   |      260|       73|
## |Set44      |NA    |BUUiALS  |4         |72   |      182|       44|
## |Set44      |NA    |BUUiALS  |5         |96   |       76|       45|
## |Set44      |NA    |BUUiALS  |8         |168  |       29|       48|
## |Set45      |NA    |0YX7iCTR |1         |0    |     4183|      173|
## |Set45      |NA    |0YX7iCTR |2         |24   |     3602|       87|
## |Set45      |NA    |0YX7iCTR |3         |48   |     3324|      216|
## |Set45      |NA    |0YX7iCTR |4         |72   |     2512|      219|
## |Set45      |NA    |0YX7iCTR |5         |96   |     2619|      118|
## |Set45      |NA    |0YX7iCTR |6         |120  |     2444|      107|
## |Set45      |NA    |0YX7iCTR |7         |144  |     1878|      166|
## |Set45      |NA    |0YX7iCTR |8         |168  |     1588|      102|
## |Set45      |NA    |0YX7iCTR |9         |192  |     2050|       89|
## |Set45      |NA    |0YX7iCTR |10        |216  |     1883|      155|
## |Set45      |NA    |6ZLDiALS |1         |0    |     3588|       69|
## |Set45      |NA    |6ZLDiALS |2         |24   |     3383|       91|
## |Set45      |NA    |6ZLDiALS |3         |48   |     3301|      140|
## |Set45      |NA    |6ZLDiALS |4         |72   |     2818|       95|
## |Set45      |NA    |6ZLDiALS |5         |96   |     3223|      152|
## |Set45      |NA    |6ZLDiALS |6         |120  |     3037|      112|
## |Set45      |NA    |6ZLDiALS |7         |144  |     2034|      175|
## |Set45      |NA    |6ZLDiALS |8         |168  |     1773|       75|
## |Set45      |NA    |6ZLDiALS |9         |192  |     2256|      137|
## |Set45      |NA    |6ZLDiALS |10        |216  |     2091|      132|
## |Set51      |NA    |0YX7iCTR |1         |0    |      880|       45|
## |Set51      |NA    |0YX7iCTR |2         |24   |      976|       46|
## |Set51      |NA    |0YX7iCTR |3         |48   |      746|       43|
## |Set51      |NA    |0YX7iCTR |4         |72   |     1058|       63|
## |Set51      |NA    |0YX7iCTR |5         |96   |     1080|       70|
## |Set51      |NA    |0YX7iCTR |6         |120  |      744|      105|
## |Set51      |NA    |0YX7iCTR |7         |144  |      926|       93|
## |Set51      |NA    |0YX7iCTR |8         |168  |      814|      163|
## |Set51      |NA    |0YX7iCTR |9         |192  |      874|      203|
## |Set51      |NA    |6ZLDiALS |1         |0    |      524|      147|
## |Set51      |NA    |6ZLDiALS |2         |24   |      737|      123|
## |Set51      |NA    |6ZLDiALS |3         |48   |      776|      122|
## |Set51      |NA    |6ZLDiALS |4         |72   |      972|      114|
## |Set51      |NA    |6ZLDiALS |5         |96   |     1047|      109|
## |Set51      |NA    |6ZLDiALS |6         |120  |      794|      108|
## |Set51      |NA    |6ZLDiALS |7         |144  |     1049|      123|
## |Set51      |NA    |6ZLDiALS |8         |168  |      833|      178|
## |Set51      |NA    |6ZLDiALS |9         |192  |      984|      247|
## |Set52      |NA    |0YX7iCTR |1         |0    |      323|       82|
## |Set52      |NA    |0YX7iCTR |2         |24   |      490|      191|
## |Set52      |NA    |0YX7iCTR |3         |48   |      614|      215|
## |Set52      |NA    |0YX7iCTR |4         |72   |      405|      388|
## |Set52      |NA    |0YX7iCTR |5         |96   |      561|      365|
## |Set52      |NA    |6ZLDiALS |1         |0    |      152|      175|
## |Set52      |NA    |6ZLDiALS |2         |24   |      215|      367|
## |Set52      |NA    |6ZLDiALS |3         |48   |      257|      496|
## |Set52      |NA    |6ZLDiALS |4         |72   |      105|      549|
## |Set52      |NA    |6ZLDiALS |5         |96   |      126|      416|
## |set57      |NA    |0YX7iCTR |1         |0    |      731|       68|
## |set57      |NA    |0YX7iCTR |2         |24   |      990|       55|
## |set57      |NA    |0YX7iCTR |3         |48   |      635|       67|
## |set57      |NA    |0YX7iCTR |4         |72   |      877|       47|
## |set57      |NA    |0YX7iCTR |5         |96   |      929|       49|
## |set57      |NA    |0YX7iCTR |6         |120  |      377|      104|
## |set57      |NA    |0YX7iCTR |7         |144  |      795|       74|
## |set57      |NA    |0YX7iCTR |8         |168  |      571|      106|
## |set57      |NA    |0YX7iCTR |9         |192  |      912|       98|
## |set57      |NA    |0YX7iCTR |10        |216  |      550|      193|
## |set57      |NA    |0YX7iCTR |11        |240  |      892|       85|
## |set57      |NA    |0YX7iCTR |12        |264  |      856|       98|
## |set57      |NA    |6ZLDiALS |1         |0    |      321|      247|
## |set57      |NA    |6ZLDiALS |2         |24   |      490|      199|
## |set57      |NA    |6ZLDiALS |3         |48   |      586|      277|
## |set57      |NA    |6ZLDiALS |4         |72   |      668|      244|
## |set57      |NA    |6ZLDiALS |5         |96   |      790|      229|
## |set57      |NA    |6ZLDiALS |6         |120  |      558|      270|
## |set57      |NA    |6ZLDiALS |7         |144  |      539|      246|
## |set57      |NA    |6ZLDiALS |8         |168  |      229|      191|
## |set57      |NA    |6ZLDiALS |9         |192  |      241|      161|
## |set57      |NA    |6ZLDiALS |10        |216  |       82|      119|
## |set57      |NA    |6ZLDiALS |11        |240  |       62|       94|
## |set57      |NA    |6ZLDiALS |12        |264  |       10|       68|
## |set58      |NA    |0YX7iCTR |1         |0    |      709|       24|
## |set58      |NA    |0YX7iCTR |3         |48   |      340|        4|
## |set58      |NA    |0YX7iCTR |4         |72   |      232|        5|
## |set58      |NA    |0YX7iCTR |5         |96   |      177|        6|
## |set58      |NA    |0YX7iCTR |6         |120  |      140|        4|
## |set58      |NA    |0YX7iCTR |8         |168  |      187|        9|
## |set58      |NA    |0YX7iCTR |9         |192  |      161|        7|
## |set58      |NA    |0YX7iCTR |11        |240  |      274|       12|
## |set58      |NA    |0YX7iCTR |12        |264  |      236|       13|
## |set58      |NA    |6ZLDiALS |1         |0    |      773|       24|
## |set58      |NA    |6ZLDiALS |3         |48   |      726|       39|
## |set58      |NA    |6ZLDiALS |4         |72   |      628|       21|
## |set58      |NA    |6ZLDiALS |5         |96   |      617|       25|
## |set58      |NA    |6ZLDiALS |6         |120  |      573|       23|
## |set58      |NA    |6ZLDiALS |8         |168  |      637|       22|
## |set58      |NA    |6ZLDiALS |9         |192  |      600|       24|
## |set58      |NA    |6ZLDiALS |11        |240  |      742|       41|
## |set58      |NA    |6ZLDiALS |12        |264  |      692|       36|
## |set59      |NA    |0YX7iCTR |1         |0    |      167|       51|
## |set59      |NA    |0YX7iCTR |2         |24   |      223|       57|
## |set59      |NA    |0YX7iCTR |3         |48   |      229|       37|
## |set59      |NA    |0YX7iCTR |4         |72   |      271|       43|
## |set59      |NA    |0YX7iCTR |5         |96   |      264|       47|
## |set59      |NA    |0YX7iCTR |6         |120  |      250|       53|
## |set59      |NA    |0YX7iCTR |7         |144  |      272|       31|
## |set59      |NA    |0YX7iCTR |8         |168  |      280|       42|
## |set59      |NA    |0YX7iCTR |9         |192  |      302|       41|
## |set59      |NA    |0YX7iCTR |10        |216  |      278|       40|
## |set59      |NA    |0YX7iCTR |11        |240  |      324|       47|
## |set59      |NA    |0YX7iCTR |12        |264  |      284|       40|
## |set59      |NA    |6ZLDiALS |1         |0    |       95|       50|
## |set59      |NA    |6ZLDiALS |2         |24   |       78|       63|
## |set59      |NA    |6ZLDiALS |3         |48   |       83|       35|
## |set59      |NA    |6ZLDiALS |4         |72   |      116|       19|
## |set59      |NA    |6ZLDiALS |5         |96   |      122|       24|
## |set59      |NA    |6ZLDiALS |6         |120  |      166|       29|
## |set59      |NA    |6ZLDiALS |7         |144  |      157|       28|
## |set59      |NA    |6ZLDiALS |8         |168  |      175|       44|
## |set59      |NA    |6ZLDiALS |9         |192  |      170|       36|
## |set59      |NA    |6ZLDiALS |10        |216  |      183|       30|
## |set59      |NA    |6ZLDiALS |11        |240  |      182|       30|
## |set59      |NA    |6ZLDiALS |12        |264  |      126|       23|
## 
## 
## |Experiment | sum_live| sum_dead|
## |:----------|--------:|--------:|
## |Set26      |    49800|     2196|
## |Set29      |    22466|      977|
## |Set30      |     5587|      508|
## |Set32      |     3502|      561|
## |Set33      |     9435|      363|
## |Set34      |     3961|      187|
## |Set35      |    11351|      417|
## |Set36      |    34335|      909|
## |Set40      |    70698|    10421|
## |Set44      |     9489|     2189|
## |Set45      |    53587|     2610|
## |Set51      |    15814|     2102|
## |Set52      |     3248|     3244|
## |set57      |    13691|     3389|
## |set58      |     8444|      339|
## |set59      |     4797|      940|

[1] “No reference conditions. Comparing all cell lines…”

Odds Ratio Comparing: 0YX7iCTR vs 2AE8iCTR

[1] “Overall significance (p-value) of association across all time-points = 6.16163643056273e-13”

[1] “Akaike Information Criterion (AIC) = 9488.65349190544”

glm - 0YX7iCTR vs 2AE8iCTR
Estimate Std. Error z value Pr(>|z|)
(Intercept) -3.2602196 0.2399376 -13.5877795 0.000000
CellLine2AE8iCTR -0.1912228 0.1934659 -0.9884056 0.322954
Timepoint 0.0849133 0.0037720 22.5112881 0.000000
CellLine2AE8iCTR:Timepoint 0.0833986 0.0113016 7.3793682 0.000000
OR Time lower upper lower99 upper99 pvalue Reference Compare
0.8259486 0 0.5652903 1.206798 0.5018784 1.359276 0.3229540 0YX7iCTR 2AE8iCTR
0.8977854 1 0.6182802 1.303646 0.5499937 1.465505 0.5709868 0YX7iCTR 2AE8iCTR
0.9758703 2 0.6754055 1.410002 0.6017479 1.582594 0.8964976 0YX7iCTR 2AE8iCTR
1.0607466 3 0.7368642 1.526989 0.6572651 1.711917 0.7510434 0YX7iCTR 2AE8iCTR
1.1530050 4 0.8028545 1.655867 0.7166599 1.855023 0.4407359 0YX7iCTR 2AE8iCTR
1.2532876 5 0.8735777 1.798042 0.7800411 2.013650 0.2201868 0YX7iCTR 2AE8iCTR
1.3622923 6 0.9492411 1.955078 0.8475144 2.189745 0.0934691 0YX7iCTR 2AE8iCTR
1.4807776 7 1.0300621 2.128709 0.9191875 2.385479 0.0340103 0YX7iCTR 2AE8iCTR
1.6095682 8 1.1162728 2.320857 0.9951743 2.603272 0.0108003 0YX7iCTR 2AE8iCTR
1.7495603 9 1.2081240 2.533648 1.0756004 2.845817 0.0030689 0YX7iCTR 2AE8iCTR
1.9017283 10 1.3058896 2.769431 1.1606068 3.116103 0.0008033 0YX7iCTR 2AE8iCTR
2.0671311 11 1.4098701 3.030798 1.2503542 3.417456 0.0001997 0YX7iCTR 2AE8iCTR
OR Time lower upper lower99 upper99
1.361475 5.5 0.9409777 1.969989 0.838002 2.212153

First half Mean

OR Time lower upper lower99 upper99
1.027774 2.5 0.7120454 1.483557 0.6345977 1.664661

Second half Mean

OR Time lower upper lower99 upper99
1.695176 8.5 1.16991 2.45642 1.041406 2.759645

Odds Ratio Comparing: 0YX7iCTR vs 6ZLDiALS

[1] “Overall significance (p-value) of association across all time-points = 5.2578473916536e-19”

[1] “Akaike Information Criterion (AIC) = 13083.6279592624”

glm - 0YX7iCTR vs 6ZLDiALS
Estimate Std. Error z value Pr(>|z|)
(Intercept) -3.0651628 0.2508875 -12.217279 0
CellLine6ZLDiALS 0.9670393 0.1126167 8.586994 0
Timepoint 0.0850175 0.0037729 22.533674 0
CellLine6ZLDiALS:Timepoint -0.0376201 0.0058514 -6.429209 0
OR Time lower upper lower99 upper99 pvalue Reference Compare
2.630146 0 2.109204 3.279753 1.968066 3.514957 0e+00 0YX7iCTR 6ZLDiALS
2.533037 1 2.037218 3.149530 1.902624 3.372331 0e+00 0YX7iCTR 6ZLDiALS
2.439514 2 1.966563 3.026209 1.837976 3.237926 0e+00 0YX7iCTR 6ZLDiALS
2.349444 3 1.897237 2.909435 1.774147 3.111291 0e+00 0YX7iCTR 6ZLDiALS
2.262700 4 1.829248 2.798861 1.711173 2.991988 0e+00 0YX7iCTR 6ZLDiALS
2.179158 5 1.762611 2.694145 1.649102 2.879585 0e+00 0YX7iCTR 6ZLDiALS
2.098701 6 1.697349 2.594954 1.587990 2.773660 0e+00 0YX7iCTR 6ZLDiALS
2.021214 7 1.633494 2.500961 1.527900 2.673804 0e+00 0YX7iCTR 6ZLDiALS
1.946588 8 1.571079 2.411849 1.468902 2.579616 0e+00 0YX7iCTR 6ZLDiALS
1.874717 9 1.510141 2.327310 1.411069 2.490712 0e+00 0YX7iCTR 6ZLDiALS
1.805500 10 1.450718 2.247047 1.354471 2.406719 1e-07 0YX7iCTR 6ZLDiALS
1.738839 11 1.392846 2.170778 1.299179 2.327286 1e-06 0YX7iCTR 6ZLDiALS
OR Time lower upper lower99 upper99
2.15663 5.5 1.738142 2.675903 1.624383 2.863323

First half Mean

OR Time lower upper lower99 upper99
2.399 2.5 1.93368 2.976322 1.807181 3.18468

Second half Mean

OR Time lower upper lower99 upper99
1.91426 8.5 1.542605 2.375483 1.441585 2.541966

Odds Ratio Comparing: 0YX7iCTR vs BUUiALS

[1] “Overall significance (p-value) of association across all time-points = 3.44019720917551e-11”

[1] “Akaike Information Criterion (AIC) = 10706.1186709188”

glm - 0YX7iCTR vs BUUiALS
Estimate Std. Error z value Pr(>|z|)
(Intercept) -3.2029269 0.2430365 -13.178787 0e+00
CellLineBUUiALS 0.6897611 0.1060444 6.504457 0e+00
Timepoint 0.0849259 0.0037700 22.526594 0e+00
CellLineBUUiALS:Timepoint -0.0343269 0.0069723 -4.923319 9e-07
OR Time lower upper lower99 upper99 pvalue Reference Compare
1.993239 0 1.619171 2.453727 1.516943 2.619086 0.0000000 0YX7iCTR BUUiALS
1.925979 1 1.570612 2.361750 1.473241 2.517845 0.0000000 0YX7iCTR BUUiALS
1.860988 2 1.522205 2.275169 1.429190 2.423243 0.0000000 0YX7iCTR BUUiALS
1.798190 3 1.473970 2.193725 1.384826 2.334940 0.0000000 0YX7iCTR BUUiALS
1.737511 4 1.425945 2.117153 1.340211 2.252588 0.0000000 0YX7iCTR BUUiALS
1.678880 5 1.378187 2.045177 1.295430 2.175830 0.0000003 0YX7iCTR BUUiALS
1.622227 6 1.330770 1.977516 1.250592 2.104298 0.0000017 0YX7iCTR BUUiALS
1.567486 7 1.283784 1.913882 1.205824 2.037620 0.0000102 0YX7iCTR BUUiALS
1.514592 8 1.237327 1.853988 1.161265 1.975422 0.0000571 0YX7iCTR BUUiALS
1.463483 9 1.191503 1.797547 1.117062 1.917335 0.0002831 0YX7iCTR BUUiALS
1.414098 10 1.146417 1.744282 1.073361 1.863002 0.0012112 0YX7iCTR BUUiALS
1.366380 11 1.102170 1.693928 1.030305 1.812080 0.0044090 0YX7iCTR BUUiALS
OR Time lower upper lower99 upper99
1.661921 5.5 1.356838 2.035654 1.273188 2.169441

First half Mean

OR Time lower upper lower99 upper99
1.832464 2.5 1.498348 2.241117 1.40664 2.387256

Second half Mean

OR Time lower upper lower99 upper99
1.491378 8.5 1.215328 1.83019 1.139735 1.951626

Odds Ratio Comparing: 2AE8iCTR vs 0YX7iCTR

[1] “Overall significance (p-value) of association across all time-points = 6.16163640805156e-13”

[1] “Akaike Information Criterion (AIC) = 9488.65349189813”

glm - 2AE8iCTR vs 0YX7iCTR
Estimate Std. Error z value Pr(>|z|)
(Intercept) -3.4514499 0.2765890 -12.4786235 0.0000000
CellLine0YX7iCTR 0.1912417 0.1934676 0.9884947 0.3229104
Timepoint 0.1683118 0.0106549 15.7967040 0.0000000
CellLine0YX7iCTR:Timepoint -0.0833985 0.0113016 -7.3793624 0.0000000
OR Time lower upper lower99 upper99 pvalue Reference Compare
1.2107521 0 0.8286521 1.7690422 0.7356967 1.9925612 0.3229104 2AE8iCTR 0YX7iCTR
1.1138731 1 0.7670911 1.6174261 0.6823683 1.8182456 0.5709224 2AE8iCTR 0YX7iCTR
1.0247459 2 0.7092301 1.4806254 0.6318831 1.6618646 0.8964183 2AE8iCTR 0YX7iCTR
0.9427502 3 0.6548939 1.3571328 0.5841489 1.5214921 0.7511236 2AE8iCTR 0YX7iCTR
0.8673155 4 0.6039226 1.2455838 0.5390848 1.3953950 0.4408018 2AE8iCTR 0YX7iCTR
0.7979168 5 0.5561692 1.1447437 0.4966179 1.2820141 0.2202304 2AE8iCTR 0YX7iCTR
0.7340710 6 0.5114967 1.0534970 0.4566810 1.1799488 0.0934925 2AE8iCTR 0YX7iCTR
0.6753339 7 0.4697759 0.9708372 0.4192093 1.0879431 0.0340207 2AE8iCTR 0YX7iCTR
0.6212967 8 0.4308822 0.8958586 0.3841377 1.0048728 0.0108043 2AE8iCTR 0YX7iCTR
0.5715833 9 0.3946942 0.8277483 0.3513984 0.9297352 0.0030702 2AE8iCTR 0YX7iCTR
0.5258477 10 0.3610910 0.7657788 0.3209186 0.8616385 0.0008037 2AE8iCTR 0YX7iCTR
0.4837717 11 0.3299516 0.7093012 0.2926199 0.7997921 0.0001998 2AE8iCTR 0YX7iCTR
OR Time lower upper lower99 upper99
0.7974382 5.5 0.5514876 1.153131 0.4912304 1.294625

First half Mean

OR Time lower upper lower99 upper99
0.9928923 2.5 0.6866598 1.435759 0.6116333 1.611929

Second half Mean

OR Time lower upper lower99 upper99
0.601984 8.5 0.4163153 0.8705035 0.3708275 0.9773218

Odds Ratio Comparing: 2AE8iCTR vs 6ZLDiALS

[1] “Overall significance (p-value) of association across all time-points = 3.61193653158207e-30”

[1] “Akaike Information Criterion (AIC) = 8303.77924786639”

glm - 2AE8iCTR vs 6ZLDiALS
Estimate Std. Error z value Pr(>|z|)
(Intercept) -3.4414474 0.3857421 -8.921627 0
CellLine6ZLDiALS 1.6001465 0.1978289 8.088539 0
Timepoint 0.1697374 0.0106753 15.900078 0
CellLine6ZLDiALS:Timepoint -0.1213207 0.0115804 -10.476385 0
OR Time lower upper lower99 upper99 pvalue Reference Compare
4.953758 0 3.3615491 7.300122 2.9764674 8.244578 0.0000000 2AE8iCTR 6ZLDiALS
4.387790 1 2.9969141 6.424176 2.6590223 7.240520 0.0000000 2AE8iCTR 6ZLDiALS
3.886485 2 2.6684679 5.660463 2.3715048 6.369273 0.0000000 2AE8iCTR 6ZLDiALS
3.442453 3 2.3728998 4.994093 2.1114308 5.612537 0.0000000 2AE8iCTR 6ZLDiALS
3.049152 4 2.1072126 4.412146 1.8765346 4.954521 0.0000000 2AE8iCTR 6ZLDiALS
2.700786 5 1.8686868 3.903407 1.6647422 4.381607 0.0000001 2AE8iCTR 6ZLDiALS
2.392221 6 1.6548478 3.458155 1.4741458 3.882059 0.0000035 2AE8iCTR 6ZLDiALS
2.118909 7 1.4634369 3.067967 1.3029815 3.445772 0.0000699 2AE8iCTR 6ZLDiALS
1.876824 8 1.2923857 2.725554 1.1496103 3.064053 0.0009415 2AE8iCTR 6ZLDiALS
1.662396 9 1.1397946 2.424613 1.0125029 2.729435 0.0083021 2AE8iCTR 6ZLDiALS
1.472467 10 1.0039154 2.159703 0.8902276 2.435512 0.0477039 2AE8iCTR 6ZLDiALS
1.304238 11 0.8831371 1.926129 0.7814424 2.176790 0.1817884 2AE8iCTR 6ZLDiALS
OR Time lower upper lower99 upper99
2.770623 5.5 1.901104 4.038044 1.689218 4.544721

First half Mean

OR Time lower upper lower99 upper99
3.736737 2.5 2.562622 5.449068 2.276617 6.133839

Second half Mean

OR Time lower upper lower99 upper99
1.804509 8.5 1.239586 2.62702 1.101818 2.955603

Odds Ratio Comparing: 2AE8iCTR vs BUUiALS

[1] “Overall significance (p-value) of association across all time-points = 3.09303939006303e-21”

[1] “Akaike Information Criterion (AIC) = 5932.58526602009”

glm - 2AE8iCTR vs BUUiALS
Estimate Std. Error z value Pr(>|z|)
(Intercept) -3.6157951 0.3537173 -10.222274 0.0000000
CellLineBUUiALS 0.4669365 0.1675003 2.787676 0.0053088
Timepoint 0.1694058 0.0106679 15.879986 0.0000000
CellLineBUUiALS:Timepoint -0.1177776 0.0121743 -9.674273 0.0000000
OR Time lower upper lower99 upper99 pvalue Reference Compare
1.5951001 0 1.1487059 2.2149659 1.0362654 2.4553018 0.0053088 2AE8iCTR BUUiALS
1.4178744 1 1.0294255 1.9529028 0.9310364 2.1592795 0.0325539 2AE8iCTR BUUiALS
1.2603396 2 0.9210486 1.7246169 0.8347275 1.9029634 0.1481707 2AE8iCTR BUUiALS
1.1203079 3 0.8226733 1.5256237 0.7467014 1.6808458 0.4708728 2AE8iCTR BUUiALS
0.9958347 4 0.7334902 1.3520108 0.6663880 1.4881521 0.9786543 2AE8iCTR BUUiALS
0.8851911 5 0.6527698 1.2003671 0.5932732 1.3207462 0.4325869 2AE8iCTR BUUiALS
0.7868408 6 0.5798494 1.0677228 0.5268870 1.1750497 0.1237418 2AE8iCTR BUUiALS
0.6994178 7 0.5141209 0.9514986 0.4667910 1.0479751 0.0228103 2AE8iCTR BUUiALS
0.6217081 8 0.4550192 0.8494608 0.4125678 0.9368666 0.0028403 2AE8iCTR BUUiALS
OR Time lower upper lower99 upper99
1.042513 4 0.7619003 1.426574 0.6905153 1.574131

First half Mean

OR Time lower upper lower99 upper99
1.277891 2 0.9310687 1.754024 0.8430237 1.937309

Second half Mean

OR Time lower upper lower99 upper99
0.7482895 6.5 0.5504398 1.017262 0.4998798 1.120159

Odds Ratio Comparing: 6ZLDiALS vs 0YX7iCTR

[1] “Overall significance (p-value) of association across all time-points = 5.25784739283953e-19”

[1] “Akaike Information Criterion (AIC) = 13083.6279592628”

glm - 6ZLDiALS vs 0YX7iCTR
Estimate Std. Error z value Pr(>|z|)
(Intercept) -2.0981285 0.2540189 -8.259734 0
CellLine0YX7iCTR -0.9670357 0.1126152 -8.587077 0
Timepoint 0.0473974 0.0044779 10.584657 0
CellLine0YX7iCTR:Timepoint 0.0376200 0.0058514 6.429191 0
OR Time lower upper lower99 upper99 pvalue Reference Compare
0.3802084 0 0.3049030 0.4741129 0.2845006 0.5081130 0e+00 6ZLDiALS 0YX7iCTR
0.3947843 1 0.3175097 0.4908658 0.2965329 0.5255897 0e+00 6ZLDiALS 0YX7iCTR
0.4099190 2 0.3304485 0.5085016 0.3088418 0.5440765 0e+00 6ZLDiALS 0YX7iCTR
0.4256339 3 0.3437114 0.5270824 0.3214121 0.5636508 0e+00 6ZLDiALS 0YX7iCTR
0.4419512 4 0.3572902 0.5466729 0.3342281 0.5843940 0e+00 6ZLDiALS 0YX7iCTR
0.4588941 5 0.3711773 0.5673404 0.3472745 0.6063902 0e+00 6ZLDiALS 0YX7iCTR
0.4764866 6 0.3853653 0.5891539 0.3605366 0.6297266 0e+00 6ZLDiALS 0YX7iCTR
0.4947534 7 0.3998482 0.6121847 0.3740011 0.6544926 0e+00 6ZLDiALS 0YX7iCTR
0.5137206 8 0.4146216 0.6365053 0.3876567 0.6807799 0e+00 6ZLDiALS 0YX7iCTR
0.5334149 9 0.4296826 0.6621898 0.4014938 0.7086821 0e+00 6ZLDiALS 0YX7iCTR
0.5538642 10 0.4450304 0.6893138 0.4155054 0.7382950 1e-07 6ZLDiALS 0YX7iCTR
0.5750975 11 0.4606660 0.7179542 0.4296870 0.7697162 1e-06 6ZLDiALS 0YX7iCTR
OR Time lower upper lower99 upper99
0.4715607 5.5 0.3800212 0.5851565 0.3551392 0.6261589

First half Mean

OR Time lower upper lower99 upper99
0.4185652 2.5 0.3375067 0.519096 0.315465 0.555369

Second half Mean

OR Time lower upper lower99 upper99
0.5245562 8.5 0.4225357 0.651217 0.3948134 0.6969487

Odds Ratio Comparing: 6ZLDiALS vs 2AE8iCTR

[1] “Overall significance (p-value) of association across all time-points = 3.61193653177261e-30”

[1] “Akaike Information Criterion (AIC) = 8303.77924786649”

glm - 6ZLDiALS vs 2AE8iCTR
Estimate Std. Error z value Pr(>|z|)
(Intercept) -1.8413045 0.3571453 -5.155617 3e-07
CellLine2AE8iCTR -1.6001437 0.1978286 -8.088534 0e+00
Timepoint 0.0484169 0.0044909 10.781068 0e+00
CellLine2AE8iCTR:Timepoint 0.1213203 0.0115804 10.476346 0e+00
OR Time lower upper lower99 upper99 pvalue Reference Compare
0.2018675 0 0.1369845 0.2974826 0.1212922 0.3359695 0.0000000 6ZLDiALS 2AE8iCTR
0.2279057 1 0.1556624 0.3336772 0.1381120 0.3760787 0.0000000 6ZLDiALS 2AE8iCTR
0.2573024 2 0.1766644 0.3747474 0.1570042 0.4216737 0.0000000 6ZLDiALS 2AE8iCTR
0.2904910 3 0.2002369 0.4214257 0.1781729 0.4736129 0.0000000 6ZLDiALS 2AE8iCTR
0.3279604 4 0.2266474 0.4745608 0.2018362 0.5328974 0.0000000 6ZLDiALS 2AE8iCTR
0.3702628 5 0.2561867 0.5351352 0.2282271 0.6006936 0.0000001 6ZLDiALS 2AE8iCTR
0.4180217 6 0.2891717 0.6042850 0.2575955 0.6783587 0.0000035 6ZLDiALS 2AE8iCTR
0.4719408 7 0.3259488 0.6833224 0.2902109 0.7674699 0.0000699 6ZLDiALS 2AE8iCTR
0.5328148 8 0.3668979 0.7737619 0.3263652 0.8698588 0.0009415 6ZLDiALS 2AE8iCTR
0.6015407 9 0.4124367 0.8773497 0.3663760 0.9876497 0.0083019 6ZLDiALS 2AE8iCTR
0.6791313 10 0.4630261 0.9960978 0.4105910 1.1233058 0.0477028 6ZLDiALS 2AE8iCTR
0.7667300 11 0.5191754 1.1323242 0.4593916 1.2796815 0.1817847 6ZLDiALS 2AE8iCTR
OR Time lower upper lower99 upper99
0.4288308 5.5 0.2940866 0.6253475 0.2612646 0.7039375

First half Mean

OR Time lower upper lower99 upper99
0.2792983 2.5 0.1920637 0.4061715 0.1707741 0.456821

Second half Mean

OR Time lower upper lower99 upper99
0.5783632 8.5 0.3961094 0.8445235 0.351755 0.9510541

Odds Ratio Comparing: 6ZLDiALS vs BUUiALS

[1] “Overall significance (p-value) of association across all time-points = 5.70943410837821e-12”

[1] “Akaike Information Criterion (AIC) = 9452.64528449605”

glm - 6ZLDiALS vs BUUiALS
Estimate Std. Error z value Pr(>|z|)
(Intercept) -1.9439756 0.2980253 -6.5228550 0.000000
CellLineBUUiALS -0.9051310 0.1185671 -7.6339144 0.000000
Timepoint 0.0482936 0.0044870 10.7631044 0.000000
CellLineBUUiALS:Timepoint 0.0033473 0.0073890 0.4530052 0.650545
OR Time lower upper lower99 upper99 pvalue Reference Compare
0.4044889 0 0.3206124 0.5103087 0.2980657 0.5489100 0 6ZLDiALS BUUiALS
0.4058451 1 0.3229440 0.5100273 0.3006009 0.5479366 0 6ZLDiALS BUUiALS
0.4072058 2 0.3250115 0.5101869 0.3028135 0.5475865 0 6ZLDiALS BUUiALS
0.4085711 3 0.3267980 0.5108060 0.3046821 0.5478839 0 6ZLDiALS BUUiALS
0.4099410 4 0.3282903 0.5118995 0.3061895 0.5488485 0 6ZLDiALS BUUiALS
0.4113155 5 0.3294794 0.5134781 0.3073243 0.5504948 0 6ZLDiALS BUUiALS
0.4126946 6 0.3303606 0.5155483 0.3080809 0.5528315 0 6ZLDiALS BUUiALS
0.4140783 7 0.3309344 0.5181113 0.3084599 0.5558610 0 6ZLDiALS BUUiALS
0.4154667 8 0.3312057 0.5211642 0.3084681 0.5595799 0 6ZLDiALS BUUiALS
0.4168597 9 0.3311839 0.5246994 0.3081176 0.5639794 0 6ZLDiALS BUUiALS
0.4182573 10 0.3308817 0.5287062 0.3074253 0.5690463 0 6ZLDiALS BUUiALS
0.4196597 11 0.3303149 0.5331708 0.3064116 0.5747637 0 6ZLDiALS BUUiALS
OR Time lower upper lower99 upper99
0.412032 5.5 0.3281681 0.5173422 0.3055533 0.5556435

First half Mean

OR Time lower upper lower99 upper99
0.4078946 2.5 0.3255226 0.5111177 0.3032793 0.5486101

Second half Mean

OR Time lower upper lower99 upper99
0.4161694 8.5 0.3308135 0.5235667 0.3078272 0.562677

Odds Ratio Comparing: BUUiALS vs 0YX7iCTR

[1] “Overall significance (p-value) of association across all time-points = 3.44019720288028e-11”

[1] “Akaike Information Criterion (AIC) = 10706.1186709152”

glm - BUUiALS vs 0YX7iCTR
Estimate Std. Error z value Pr(>|z|)
(Intercept) -2.5131782 0.2481378 -10.128157 0e+00
CellLine0YX7iCTR -0.6897571 0.1060433 -6.504483 0e+00
Timepoint 0.0505987 0.0058689 8.621473 0e+00
CellLine0YX7iCTR:Timepoint 0.0343270 0.0069723 4.923346 9e-07
OR Time lower upper lower99 upper99 pvalue Reference Compare
0.5016979 0 0.4075458 0.6176013 0.3818152 0.6592216 0.0000000 BUUiALS 0YX7iCTR
0.5192187 1 0.4234174 0.6366959 0.3971677 0.6787765 0.0000000 BUUiALS 0YX7iCTR
0.5373514 2 0.4395305 0.6569432 0.4126730 0.6996982 0.0000000 BUUiALS 0YX7iCTR
0.5561174 3 0.4558485 0.6784415 0.4282795 0.7221138 0.0000000 BUUiALS 0YX7iCTR
0.5755386 4 0.4723355 0.7012912 0.4439368 0.7461530 0.0000000 BUUiALS 0YX7iCTR
0.5956382 5 0.4889584 0.7255932 0.4595978 0.7719463 0.0000003 BUUiALS 0YX7iCTR
0.6164397 6 0.5056882 0.7514470 0.4752211 0.7996233 0.0000017 BUUiALS 0YX7iCTR
0.6379676 7 0.5225016 0.7789501 0.4907721 0.8293110 0.0000102 BUUiALS 0YX7iCTR
0.6602473 8 0.5393815 0.8081972 0.5062245 0.8611328 0.0000571 BUUiALS 0YX7iCTR
0.6833052 9 0.5563174 0.8392798 0.5215609 0.8952089 0.0002831 BUUiALS 0YX7iCTR
0.7071683 10 0.5733056 0.8722869 0.5367719 0.9316564 0.0012114 BUUiALS 0YX7iCTR
0.7318647 11 0.5903480 0.9073054 0.5518559 0.9705902 0.0044095 BUUiALS 0YX7iCTR
OR Time lower upper lower99 upper99
0.6102129 5.5 0.4979315 0.747836 0.4671564 0.7971193

First half Mean

OR Time lower upper lower99 upper99
0.5475937 2.5 0.4479393 0.6694277 0.4205783 0.7129849

Second half Mean

OR Time lower upper lower99 upper99
0.6728321 8.5 0.5479237 0.8262444 0.5137344 0.8812538

Odds Ratio Comparing: BUUiALS vs 2AE8iCTR

[1] “Overall significance (p-value) of association across all time-points = 3.09303938876478e-21”

[1] “Akaike Information Criterion (AIC) = 5932.58526601925”

glm - BUUiALS vs 2AE8iCTR
Estimate Std. Error z value Pr(>|z|)
(Intercept) -3.1488475 0.3363344 -9.362252 0.0000000
CellLine2AE8iCTR -0.4669384 0.1674996 -2.787699 0.0053084
Timepoint 0.0516283 0.0058736 8.789888 0.0000000
CellLine2AE8iCTR:Timepoint 0.1177777 0.0121743 9.674285 0.0000000
OR Time lower upper lower99 upper99 pvalue Reference Compare
0.6269187 0 0.4514740 0.8705421 0.4072819 0.9650002 0.0053084 BUUiALS 2AE8iCTR
0.7052798 1 0.5120580 0.9714126 0.4631174 1.0740681 0.0325523 BUUiALS 2AE8iCTR
0.7934355 2 0.5798386 1.0857158 0.5254961 1.1979917 0.1481660 BUUiALS 2AE8iCTR
0.8926102 3 0.6554692 1.2155459 0.5949384 1.3392192 0.4708644 BUUiALS 2AE8iCTR
1.0041811 4 0.7396386 1.3633411 0.6719741 1.5006228 0.9786629 BUUiALS 2AE8iCTR
1.1296977 5 0.8330779 1.5319297 0.7571474 1.6855592 0.4325918 BUUiALS 2AE8iCTR
1.2709031 6 0.9365719 1.7245815 0.8510273 1.8979350 0.1237433 BUUiALS 2AE8iCTR
1.4297583 7 1.0509728 1.9450634 0.9542205 2.1422812 0.0228106 BUUiALS 2AE8iCTR
1.6084694 8 1.1772163 2.1977049 1.0673871 2.4238386 0.0028404 BUUiALS 2AE8iCTR
OR Time lower upper lower99 upper99
1.05125 4 0.7707019 1.433982 0.6991767 1.580724

First half Mean

OR Time lower upper lower99 upper99
0.8044851 2 0.5876957 1.101311 0.5325616 1.21538

Second half Mean

OR Time lower upper lower99 upper99
1.359707 6.5 0.9994597 1.84982 0.9074456 2.037403

Odds Ratio Comparing: BUUiALS vs 6ZLDiALS

[1] “Overall significance (p-value) of association across all time-points = 5.70943411563241e-12”

[1] “Akaike Information Criterion (AIC) = 9452.64528449859”

glm - BUUiALS vs 6ZLDiALS
Estimate Std. Error z value Pr(>|z|)
(Intercept) -2.8491044 0.3018659 -9.4383105 0.0000000
CellLine6ZLDiALS 0.9051247 0.1185670 7.6338666 0.0000000
Timepoint 0.0516408 0.0058742 8.7910787 0.0000000
CellLine6ZLDiALS:Timepoint -0.0033471 0.0073890 -0.4529845 0.6505599
OR Time lower upper lower99 upper99 pvalue Reference Compare
2.472240 0 1.959586 3.119011 1.821781 3.354943 0 BUUiALS 6ZLDiALS
2.463979 1 1.960668 3.096493 1.825018 3.326649 0 BUUiALS 6ZLDiALS
2.455746 2 1.960055 3.076795 1.826185 3.302342 0 BUUiALS 6ZLDiALS
2.447540 3 1.957680 3.059976 1.825194 3.282090 0 BUUiALS 6ZLDiALS
2.439361 4 1.953498 3.046066 1.821987 3.265932 0 BUUiALS 6ZLDiALS
2.431210 5 1.947492 3.035074 1.816538 3.253873 0 BUUiALS 6ZLDiALS
2.423086 6 1.939673 3.026979 1.808860 3.245882 0 BUUiALS 6ZLDiALS
2.414990 7 1.930077 3.021731 1.799002 3.241894 0 BUUiALS 6ZLDiALS
2.406920 8 1.918772 3.019256 1.787046 3.241809 0 BUUiALS 6ZLDiALS
2.398877 9 1.905844 3.019455 1.773106 3.245497 0 BUUiALS 6ZLDiALS
2.390861 10 1.891401 3.022213 1.757319 3.252807 0 BUUiALS 6ZLDiALS
2.382872 11 1.875563 3.027400 1.739838 3.263568 0 BUUiALS 6ZLDiALS
OR Time lower upper lower99 upper99
2.427307 5.5 1.933359 3.047537 1.800156 3.273107

First half Mean

OR Time lower upper lower99 upper99
2.45168 2.5 1.956496 3.072236 1.822784 3.297638

Second half Mean

OR Time lower upper lower99 upper99
2.402934 8.5 1.910222 3.022839 1.777529 3.248576

[1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE

Odds Ratio Combined

Reference condition: 0YX7iCTR

Odds Ratio Combined

Reference condition: 2AE8iCTR

Odds Ratio Combined

Reference condition: 6ZLDiALS

Odds Ratio Combined

Reference condition: BUUiALS

] NULL

[[2]] NULL

[[3]] NULL

[[4]] NULL