MRID Logodd
Julia Kaye
Thomas Reuben
Stephanie Lam
2025-08-11
Last code update: Feb 8, 202s4
User Inputs
source directory: /Users/nalbistami/Gladstone Dropbox/Noura Al
Bistami/AALS Shared DropBox/GEDI Analysis/Combined
Experiments/CombinedC9orf72/Cell line compare (manuscript)
output directory: /Users/nalbistami/Gladstone Dropbox/Noura Al
Bistami/AALS Shared DropBox/GEDI Analysis/Combined
Experiments/CombinedC9orf72/Cell line compare (manuscript)
drug: FALSE
drug kept: None
line kept: 0YX7iCTR, 2AE8iCTR, BUUiALS, 6ZLDiALS
multiple_experiments: TRUE
multiple_plates <- FALSE
compare_cellline <- TRUE
compare_class <- FALSE
compare_drug <-FALSE
reference conditions:
##
##
## |Experiment |Plate |CellLine | sum_live| sum_dead|
## |:----------|:-----|:--------|--------:|--------:|
## |Set26 |NA |0YX7iCTR | 22460| 665|
## |Set26 |NA |2AE8iCTR | 14628| 756|
## |Set26 |NA |BUUiALS | 12712| 775|
## |Set29 |NA |2AE8iCTR | 5463| 350|
## |Set29 |NA |6ZLDiALS | 7229| 351|
## |Set29 |NA |BUUiALS | 9774| 276|
## |Set30 |NA |0YX7iCTR | 1409| 144|
## |Set30 |NA |2AE8iCTR | 1670| 148|
## |Set30 |NA |6ZLDiALS | 695| 97|
## |Set30 |NA |BUUiALS | 1813| 119|
## |Set32 |NA |2AE8iCTR | 1927| 118|
## |Set32 |NA |6ZLDiALS | 588| 269|
## |Set32 |NA |BUUiALS | 987| 174|
## |Set33 |NA |0YX7iCTR | 986| 24|
## |Set33 |NA |BUUiALS | 8449| 339|
## |Set34 |NA |0YX7iCTR | 1784| 112|
## |Set34 |NA |BUUiALS | 2177| 75|
## |Set35 |NA |0YX7iCTR | 2274| 69|
## |Set35 |NA |BUUiALS | 9077| 348|
## |Set36 |NA |2AE8iCTR | 30438| 412|
## |Set36 |NA |6ZLDiALS | 3897| 497|
## |Set40 |NA |0YX7iCTR | 52680| 4734|
## |Set40 |NA |6ZLDiALS | 2945| 2454|
## |Set40 |NA |BUUiALS | 15073| 3233|
## |Set44 |NA |0YX7iCTR | 7678| 957|
## |Set44 |NA |6ZLDiALS | 869| 770|
## |Set44 |NA |BUUiALS | 942| 462|
## |Set45 |NA |0YX7iCTR | 26083| 1432|
## |Set45 |NA |6ZLDiALS | 27504| 1178|
## |Set51 |NA |0YX7iCTR | 8098| 831|
## |Set51 |NA |6ZLDiALS | 7716| 1271|
## |Set52 |NA |0YX7iCTR | 2393| 1241|
## |Set52 |NA |6ZLDiALS | 855| 2003|
## |set57 |NA |0YX7iCTR | 9115| 1044|
## |set57 |NA |6ZLDiALS | 4576| 2345|
## |set58 |NA |0YX7iCTR | 2456| 84|
## |set58 |NA |6ZLDiALS | 5988| 255|
## |set59 |NA |0YX7iCTR | 3144| 529|
## |set59 |NA |6ZLDiALS | 1653| 411|##
##
## |Experiment |Plate |CellLine |Timepoint |Hour | sum_live| sum_dead|
## |:----------|:-----|:--------|:---------|:----|--------:|--------:|
## |Set26 |NA |0YX7iCTR |1 |0 | 2991| 57|
## |Set26 |NA |0YX7iCTR |2 |24 | 3209| 49|
## |Set26 |NA |0YX7iCTR |3 |48 | 3186| 45|
## |Set26 |NA |0YX7iCTR |4 |72 | 3081| 60|
## |Set26 |NA |0YX7iCTR |5 |96 | 3063| 67|
## |Set26 |NA |0YX7iCTR |6 |120 | 2439| 119|
## |Set26 |NA |0YX7iCTR |7 |144 | 2180| 156|
## |Set26 |NA |0YX7iCTR |8 |168 | 2311| 112|
## |Set26 |NA |2AE8iCTR |1 |0 | 2018| 69|
## |Set26 |NA |2AE8iCTR |2 |24 | 2366| 53|
## |Set26 |NA |2AE8iCTR |3 |48 | 2260| 55|
## |Set26 |NA |2AE8iCTR |4 |72 | 2040| 62|
## |Set26 |NA |2AE8iCTR |5 |96 | 1995| 80|
## |Set26 |NA |2AE8iCTR |6 |120 | 1405| 121|
## |Set26 |NA |2AE8iCTR |7 |144 | 1184| 157|
## |Set26 |NA |2AE8iCTR |8 |168 | 1360| 159|
## |Set26 |NA |BUUiALS |1 |0 | 1874| 121|
## |Set26 |NA |BUUiALS |2 |24 | 1946| 64|
## |Set26 |NA |BUUiALS |3 |48 | 1900| 61|
## |Set26 |NA |BUUiALS |4 |72 | 1738| 60|
## |Set26 |NA |BUUiALS |5 |96 | 1736| 55|
## |Set26 |NA |BUUiALS |6 |120 | 1242| 129|
## |Set26 |NA |BUUiALS |7 |144 | 1092| 167|
## |Set26 |NA |BUUiALS |8 |168 | 1184| 118|
## |Set29 |NA |2AE8iCTR |1 |0 | 1201| 47|
## |Set29 |NA |2AE8iCTR |2 |24 | 931| 37|
## |Set29 |NA |2AE8iCTR |3 |48 | 1091| 35|
## |Set29 |NA |2AE8iCTR |6 |120 | 678| 68|
## |Set29 |NA |2AE8iCTR |7 |144 | 780| 86|
## |Set29 |NA |2AE8iCTR |8 |168 | 782| 77|
## |Set29 |NA |6ZLDiALS |1 |0 | 1351| 41|
## |Set29 |NA |6ZLDiALS |2 |24 | 1256| 41|
## |Set29 |NA |6ZLDiALS |3 |48 | 1358| 47|
## |Set29 |NA |6ZLDiALS |6 |120 | 941| 84|
## |Set29 |NA |6ZLDiALS |7 |144 | 1143| 66|
## |Set29 |NA |6ZLDiALS |8 |168 | 1180| 72|
## |Set29 |NA |BUUiALS |1 |0 | 1806| 42|
## |Set29 |NA |BUUiALS |2 |24 | 1540| 35|
## |Set29 |NA |BUUiALS |3 |48 | 1696| 37|
## |Set29 |NA |BUUiALS |6 |120 | 1498| 52|
## |Set29 |NA |BUUiALS |7 |144 | 1595| 46|
## |Set29 |NA |BUUiALS |8 |168 | 1639| 64|
## |Set30 |NA |0YX7iCTR |1 |0 | 111| 18|
## |Set30 |NA |0YX7iCTR |2 |24 | 122| 17|
## |Set30 |NA |0YX7iCTR |3 |48 | 139| 15|
## |Set30 |NA |0YX7iCTR |4 |72 | 151| 15|
## |Set30 |NA |0YX7iCTR |5 |96 | 149| 14|
## |Set30 |NA |0YX7iCTR |6 |120 | 188| 17|
## |Set30 |NA |0YX7iCTR |7 |144 | 188| 11|
## |Set30 |NA |0YX7iCTR |8 |168 | 185| 21|
## |Set30 |NA |0YX7iCTR |9 |192 | 176| 16|
## |Set30 |NA |2AE8iCTR |1 |0 | 62| 20|
## |Set30 |NA |2AE8iCTR |2 |24 | 106| 32|
## |Set30 |NA |2AE8iCTR |3 |48 | 109| 24|
## |Set30 |NA |2AE8iCTR |4 |72 | 181| 21|
## |Set30 |NA |2AE8iCTR |5 |96 | 215| 15|
## |Set30 |NA |2AE8iCTR |6 |120 | 288| 14|
## |Set30 |NA |2AE8iCTR |7 |144 | 236| 4|
## |Set30 |NA |2AE8iCTR |8 |168 | 252| 5|
## |Set30 |NA |2AE8iCTR |9 |192 | 221| 13|
## |Set30 |NA |6ZLDiALS |1 |0 | 32| 9|
## |Set30 |NA |6ZLDiALS |2 |24 | 48| 13|
## |Set30 |NA |6ZLDiALS |3 |48 | 63| 16|
## |Set30 |NA |6ZLDiALS |4 |72 | 87| 8|
## |Set30 |NA |6ZLDiALS |5 |96 | 83| 5|
## |Set30 |NA |6ZLDiALS |6 |120 | 89| 9|
## |Set30 |NA |6ZLDiALS |7 |144 | 91| 12|
## |Set30 |NA |6ZLDiALS |8 |168 | 105| 8|
## |Set30 |NA |6ZLDiALS |9 |192 | 97| 17|
## |Set30 |NA |BUUiALS |1 |0 | 120| 7|
## |Set30 |NA |BUUiALS |2 |24 | 124| 14|
## |Set30 |NA |BUUiALS |3 |48 | 159| 15|
## |Set30 |NA |BUUiALS |4 |72 | 188| 10|
## |Set30 |NA |BUUiALS |5 |96 | 203| 14|
## |Set30 |NA |BUUiALS |6 |120 | 238| 12|
## |Set30 |NA |BUUiALS |7 |144 | 258| 21|
## |Set30 |NA |BUUiALS |8 |168 | 269| 14|
## |Set30 |NA |BUUiALS |9 |192 | 254| 12|
## |Set32 |NA |2AE8iCTR |1 |0 | 157| 10|
## |Set32 |NA |2AE8iCTR |2 |24 | 187| 13|
## |Set32 |NA |2AE8iCTR |3 |48 | 238| 16|
## |Set32 |NA |2AE8iCTR |4 |72 | 249| 7|
## |Set32 |NA |2AE8iCTR |5 |96 | 287| 15|
## |Set32 |NA |2AE8iCTR |6 |120 | 269| 17|
## |Set32 |NA |2AE8iCTR |7 |144 | 243| 23|
## |Set32 |NA |2AE8iCTR |8 |168 | 297| 17|
## |Set32 |NA |6ZLDiALS |1 |0 | 58| 26|
## |Set32 |NA |6ZLDiALS |2 |24 | 47| 33|
## |Set32 |NA |6ZLDiALS |3 |48 | 75| 30|
## |Set32 |NA |6ZLDiALS |4 |72 | 80| 35|
## |Set32 |NA |6ZLDiALS |5 |96 | 81| 43|
## |Set32 |NA |6ZLDiALS |6 |120 | 78| 34|
## |Set32 |NA |6ZLDiALS |7 |144 | 82| 34|
## |Set32 |NA |6ZLDiALS |8 |168 | 87| 34|
## |Set32 |NA |BUUiALS |1 |0 | 91| 13|
## |Set32 |NA |BUUiALS |2 |24 | 122| 16|
## |Set32 |NA |BUUiALS |3 |48 | 142| 17|
## |Set32 |NA |BUUiALS |4 |72 | 154| 17|
## |Set32 |NA |BUUiALS |5 |96 | 137| 33|
## |Set32 |NA |BUUiALS |6 |120 | 74| 13|
## |Set32 |NA |BUUiALS |7 |144 | 125| 30|
## |Set32 |NA |BUUiALS |8 |168 | 142| 35|
## |Set33 |NA |0YX7iCTR |1 |0 | 185| 3|
## |Set33 |NA |0YX7iCTR |2 |24 | 203| 4|
## |Set33 |NA |0YX7iCTR |5 |96 | 204| 5|
## |Set33 |NA |0YX7iCTR |6 |120 | 194| 7|
## |Set33 |NA |0YX7iCTR |8 |168 | 200| 5|
## |Set33 |NA |BUUiALS |1 |0 | 1934| 94|
## |Set33 |NA |BUUiALS |2 |24 | 1918| 76|
## |Set33 |NA |BUUiALS |5 |96 | 1999| 65|
## |Set33 |NA |BUUiALS |6 |120 | 1766| 55|
## |Set33 |NA |BUUiALS |8 |168 | 832| 49|
## |Set34 |NA |0YX7iCTR |1 |0 | 415| 23|
## |Set34 |NA |0YX7iCTR |6 |120 | 453| 22|
## |Set34 |NA |0YX7iCTR |7 |144 | 460| 33|
## |Set34 |NA |0YX7iCTR |8 |168 | 456| 34|
## |Set34 |NA |BUUiALS |1 |0 | 497| 26|
## |Set34 |NA |BUUiALS |6 |120 | 563| 15|
## |Set34 |NA |BUUiALS |7 |144 | 562| 13|
## |Set34 |NA |BUUiALS |8 |168 | 555| 21|
## |Set35 |NA |0YX7iCTR |1 |0 | 446| 7|
## |Set35 |NA |0YX7iCTR |2 |24 | 485| 7|
## |Set35 |NA |0YX7iCTR |3 |48 | 437| 10|
## |Set35 |NA |0YX7iCTR |4 |72 | 357| 11|
## |Set35 |NA |0YX7iCTR |5 |96 | 296| 13|
## |Set35 |NA |0YX7iCTR |6 |120 | 253| 21|
## |Set35 |NA |BUUiALS |1 |0 | 1283| 23|
## |Set35 |NA |BUUiALS |2 |24 | 1421| 33|
## |Set35 |NA |BUUiALS |3 |48 | 1683| 62|
## |Set35 |NA |BUUiALS |4 |72 | 1619| 70|
## |Set35 |NA |BUUiALS |5 |96 | 1565| 82|
## |Set35 |NA |BUUiALS |6 |120 | 1506| 78|
## |Set36 |NA |2AE8iCTR |1 |0 | 3746| 29|
## |Set36 |NA |2AE8iCTR |2 |24 | 4034| 29|
## |Set36 |NA |2AE8iCTR |3 |48 | 3723| 37|
## |Set36 |NA |2AE8iCTR |4 |72 | 3863| 59|
## |Set36 |NA |2AE8iCTR |5 |96 | 4025| 74|
## |Set36 |NA |2AE8iCTR |6 |120 | 3961| 77|
## |Set36 |NA |2AE8iCTR |7 |144 | 3573| 52|
## |Set36 |NA |2AE8iCTR |8 |168 | 3513| 55|
## |Set36 |NA |6ZLDiALS |1 |0 | 367| 21|
## |Set36 |NA |6ZLDiALS |2 |24 | 470| 51|
## |Set36 |NA |6ZLDiALS |3 |48 | 516| 35|
## |Set36 |NA |6ZLDiALS |4 |72 | 557| 57|
## |Set36 |NA |6ZLDiALS |5 |96 | 554| 87|
## |Set36 |NA |6ZLDiALS |6 |120 | 527| 88|
## |Set36 |NA |6ZLDiALS |7 |144 | 506| 78|
## |Set36 |NA |6ZLDiALS |8 |168 | 400| 80|
## |Set40 |NA |0YX7iCTR |1 |0 | 4891| 235|
## |Set40 |NA |0YX7iCTR |2 |24 | 5540| 413|
## |Set40 |NA |0YX7iCTR |3 |48 | 5770| 441|
## |Set40 |NA |0YX7iCTR |4 |72 | 6004| 474|
## |Set40 |NA |0YX7iCTR |5 |96 | 5927| 493|
## |Set40 |NA |0YX7iCTR |6 |120 | 5993| 594|
## |Set40 |NA |0YX7iCTR |7 |144 | 6053| 600|
## |Set40 |NA |0YX7iCTR |8 |168 | 6200| 699|
## |Set40 |NA |0YX7iCTR |9 |192 | 6302| 785|
## |Set40 |NA |6ZLDiALS |1 |0 | 420| 330|
## |Set40 |NA |6ZLDiALS |2 |24 | 323| 349|
## |Set40 |NA |6ZLDiALS |3 |48 | 299| 332|
## |Set40 |NA |6ZLDiALS |4 |72 | 321| 242|
## |Set40 |NA |6ZLDiALS |5 |96 | 290| 253|
## |Set40 |NA |6ZLDiALS |6 |120 | 294| 206|
## |Set40 |NA |6ZLDiALS |7 |144 | 335| 235|
## |Set40 |NA |6ZLDiALS |8 |168 | 335| 250|
## |Set40 |NA |6ZLDiALS |9 |192 | 328| 257|
## |Set40 |NA |BUUiALS |1 |0 | 2596| 485|
## |Set40 |NA |BUUiALS |2 |24 | 2133| 491|
## |Set40 |NA |BUUiALS |3 |48 | 1892| 377|
## |Set40 |NA |BUUiALS |4 |72 | 1777| 324|
## |Set40 |NA |BUUiALS |5 |96 | 1492| 305|
## |Set40 |NA |BUUiALS |6 |120 | 1394| 328|
## |Set40 |NA |BUUiALS |7 |144 | 1256| 314|
## |Set40 |NA |BUUiALS |8 |168 | 1286| 311|
## |Set40 |NA |BUUiALS |9 |192 | 1247| 298|
## |Set44 |NA |0YX7iCTR |1 |0 | 800| 291|
## |Set44 |NA |0YX7iCTR |2 |24 | 1836| 117|
## |Set44 |NA |0YX7iCTR |3 |48 | 1785| 88|
## |Set44 |NA |0YX7iCTR |4 |72 | 1721| 116|
## |Set44 |NA |0YX7iCTR |5 |96 | 803| 192|
## |Set44 |NA |0YX7iCTR |8 |168 | 733| 153|
## |Set44 |NA |6ZLDiALS |1 |0 | 125| 272|
## |Set44 |NA |6ZLDiALS |2 |24 | 239| 142|
## |Set44 |NA |6ZLDiALS |3 |48 | 221| 76|
## |Set44 |NA |6ZLDiALS |4 |72 | 151| 84|
## |Set44 |NA |6ZLDiALS |5 |96 | 82| 102|
## |Set44 |NA |6ZLDiALS |8 |168 | 51| 94|
## |Set44 |NA |BUUiALS |1 |0 | 123| 173|
## |Set44 |NA |BUUiALS |2 |24 | 272| 79|
## |Set44 |NA |BUUiALS |3 |48 | 260| 73|
## |Set44 |NA |BUUiALS |4 |72 | 182| 44|
## |Set44 |NA |BUUiALS |5 |96 | 76| 45|
## |Set44 |NA |BUUiALS |8 |168 | 29| 48|
## |Set45 |NA |0YX7iCTR |1 |0 | 4183| 173|
## |Set45 |NA |0YX7iCTR |2 |24 | 3602| 87|
## |Set45 |NA |0YX7iCTR |3 |48 | 3324| 216|
## |Set45 |NA |0YX7iCTR |4 |72 | 2512| 219|
## |Set45 |NA |0YX7iCTR |5 |96 | 2619| 118|
## |Set45 |NA |0YX7iCTR |6 |120 | 2444| 107|
## |Set45 |NA |0YX7iCTR |7 |144 | 1878| 166|
## |Set45 |NA |0YX7iCTR |8 |168 | 1588| 102|
## |Set45 |NA |0YX7iCTR |9 |192 | 2050| 89|
## |Set45 |NA |0YX7iCTR |10 |216 | 1883| 155|
## |Set45 |NA |6ZLDiALS |1 |0 | 3588| 69|
## |Set45 |NA |6ZLDiALS |2 |24 | 3383| 91|
## |Set45 |NA |6ZLDiALS |3 |48 | 3301| 140|
## |Set45 |NA |6ZLDiALS |4 |72 | 2818| 95|
## |Set45 |NA |6ZLDiALS |5 |96 | 3223| 152|
## |Set45 |NA |6ZLDiALS |6 |120 | 3037| 112|
## |Set45 |NA |6ZLDiALS |7 |144 | 2034| 175|
## |Set45 |NA |6ZLDiALS |8 |168 | 1773| 75|
## |Set45 |NA |6ZLDiALS |9 |192 | 2256| 137|
## |Set45 |NA |6ZLDiALS |10 |216 | 2091| 132|
## |Set51 |NA |0YX7iCTR |1 |0 | 880| 45|
## |Set51 |NA |0YX7iCTR |2 |24 | 976| 46|
## |Set51 |NA |0YX7iCTR |3 |48 | 746| 43|
## |Set51 |NA |0YX7iCTR |4 |72 | 1058| 63|
## |Set51 |NA |0YX7iCTR |5 |96 | 1080| 70|
## |Set51 |NA |0YX7iCTR |6 |120 | 744| 105|
## |Set51 |NA |0YX7iCTR |7 |144 | 926| 93|
## |Set51 |NA |0YX7iCTR |8 |168 | 814| 163|
## |Set51 |NA |0YX7iCTR |9 |192 | 874| 203|
## |Set51 |NA |6ZLDiALS |1 |0 | 524| 147|
## |Set51 |NA |6ZLDiALS |2 |24 | 737| 123|
## |Set51 |NA |6ZLDiALS |3 |48 | 776| 122|
## |Set51 |NA |6ZLDiALS |4 |72 | 972| 114|
## |Set51 |NA |6ZLDiALS |5 |96 | 1047| 109|
## |Set51 |NA |6ZLDiALS |6 |120 | 794| 108|
## |Set51 |NA |6ZLDiALS |7 |144 | 1049| 123|
## |Set51 |NA |6ZLDiALS |8 |168 | 833| 178|
## |Set51 |NA |6ZLDiALS |9 |192 | 984| 247|
## |Set52 |NA |0YX7iCTR |1 |0 | 323| 82|
## |Set52 |NA |0YX7iCTR |2 |24 | 490| 191|
## |Set52 |NA |0YX7iCTR |3 |48 | 614| 215|
## |Set52 |NA |0YX7iCTR |4 |72 | 405| 388|
## |Set52 |NA |0YX7iCTR |5 |96 | 561| 365|
## |Set52 |NA |6ZLDiALS |1 |0 | 152| 175|
## |Set52 |NA |6ZLDiALS |2 |24 | 215| 367|
## |Set52 |NA |6ZLDiALS |3 |48 | 257| 496|
## |Set52 |NA |6ZLDiALS |4 |72 | 105| 549|
## |Set52 |NA |6ZLDiALS |5 |96 | 126| 416|
## |set57 |NA |0YX7iCTR |1 |0 | 731| 68|
## |set57 |NA |0YX7iCTR |2 |24 | 990| 55|
## |set57 |NA |0YX7iCTR |3 |48 | 635| 67|
## |set57 |NA |0YX7iCTR |4 |72 | 877| 47|
## |set57 |NA |0YX7iCTR |5 |96 | 929| 49|
## |set57 |NA |0YX7iCTR |6 |120 | 377| 104|
## |set57 |NA |0YX7iCTR |7 |144 | 795| 74|
## |set57 |NA |0YX7iCTR |8 |168 | 571| 106|
## |set57 |NA |0YX7iCTR |9 |192 | 912| 98|
## |set57 |NA |0YX7iCTR |10 |216 | 550| 193|
## |set57 |NA |0YX7iCTR |11 |240 | 892| 85|
## |set57 |NA |0YX7iCTR |12 |264 | 856| 98|
## |set57 |NA |6ZLDiALS |1 |0 | 321| 247|
## |set57 |NA |6ZLDiALS |2 |24 | 490| 199|
## |set57 |NA |6ZLDiALS |3 |48 | 586| 277|
## |set57 |NA |6ZLDiALS |4 |72 | 668| 244|
## |set57 |NA |6ZLDiALS |5 |96 | 790| 229|
## |set57 |NA |6ZLDiALS |6 |120 | 558| 270|
## |set57 |NA |6ZLDiALS |7 |144 | 539| 246|
## |set57 |NA |6ZLDiALS |8 |168 | 229| 191|
## |set57 |NA |6ZLDiALS |9 |192 | 241| 161|
## |set57 |NA |6ZLDiALS |10 |216 | 82| 119|
## |set57 |NA |6ZLDiALS |11 |240 | 62| 94|
## |set57 |NA |6ZLDiALS |12 |264 | 10| 68|
## |set58 |NA |0YX7iCTR |1 |0 | 709| 24|
## |set58 |NA |0YX7iCTR |3 |48 | 340| 4|
## |set58 |NA |0YX7iCTR |4 |72 | 232| 5|
## |set58 |NA |0YX7iCTR |5 |96 | 177| 6|
## |set58 |NA |0YX7iCTR |6 |120 | 140| 4|
## |set58 |NA |0YX7iCTR |8 |168 | 187| 9|
## |set58 |NA |0YX7iCTR |9 |192 | 161| 7|
## |set58 |NA |0YX7iCTR |11 |240 | 274| 12|
## |set58 |NA |0YX7iCTR |12 |264 | 236| 13|
## |set58 |NA |6ZLDiALS |1 |0 | 773| 24|
## |set58 |NA |6ZLDiALS |3 |48 | 726| 39|
## |set58 |NA |6ZLDiALS |4 |72 | 628| 21|
## |set58 |NA |6ZLDiALS |5 |96 | 617| 25|
## |set58 |NA |6ZLDiALS |6 |120 | 573| 23|
## |set58 |NA |6ZLDiALS |8 |168 | 637| 22|
## |set58 |NA |6ZLDiALS |9 |192 | 600| 24|
## |set58 |NA |6ZLDiALS |11 |240 | 742| 41|
## |set58 |NA |6ZLDiALS |12 |264 | 692| 36|
## |set59 |NA |0YX7iCTR |1 |0 | 167| 51|
## |set59 |NA |0YX7iCTR |2 |24 | 223| 57|
## |set59 |NA |0YX7iCTR |3 |48 | 229| 37|
## |set59 |NA |0YX7iCTR |4 |72 | 271| 43|
## |set59 |NA |0YX7iCTR |5 |96 | 264| 47|
## |set59 |NA |0YX7iCTR |6 |120 | 250| 53|
## |set59 |NA |0YX7iCTR |7 |144 | 272| 31|
## |set59 |NA |0YX7iCTR |8 |168 | 280| 42|
## |set59 |NA |0YX7iCTR |9 |192 | 302| 41|
## |set59 |NA |0YX7iCTR |10 |216 | 278| 40|
## |set59 |NA |0YX7iCTR |11 |240 | 324| 47|
## |set59 |NA |0YX7iCTR |12 |264 | 284| 40|
## |set59 |NA |6ZLDiALS |1 |0 | 95| 50|
## |set59 |NA |6ZLDiALS |2 |24 | 78| 63|
## |set59 |NA |6ZLDiALS |3 |48 | 83| 35|
## |set59 |NA |6ZLDiALS |4 |72 | 116| 19|
## |set59 |NA |6ZLDiALS |5 |96 | 122| 24|
## |set59 |NA |6ZLDiALS |6 |120 | 166| 29|
## |set59 |NA |6ZLDiALS |7 |144 | 157| 28|
## |set59 |NA |6ZLDiALS |8 |168 | 175| 44|
## |set59 |NA |6ZLDiALS |9 |192 | 170| 36|
## |set59 |NA |6ZLDiALS |10 |216 | 183| 30|
## |set59 |NA |6ZLDiALS |11 |240 | 182| 30|
## |set59 |NA |6ZLDiALS |12 |264 | 126| 23|
##
##
## |Experiment | sum_live| sum_dead|
## |:----------|--------:|--------:|
## |Set26 | 49800| 2196|
## |Set29 | 22466| 977|
## |Set30 | 5587| 508|
## |Set32 | 3502| 561|
## |Set33 | 9435| 363|
## |Set34 | 3961| 187|
## |Set35 | 11351| 417|
## |Set36 | 34335| 909|
## |Set40 | 70698| 10421|
## |Set44 | 9489| 2189|
## |Set45 | 53587| 2610|
## |Set51 | 15814| 2102|
## |Set52 | 3248| 3244|
## |set57 | 13691| 3389|
## |set58 | 8444| 339|
## |set59 | 4797| 940|
[1] “No reference conditions. Comparing all cell lines…”
Odds Ratio Comparing: 0YX7iCTR vs 2AE8iCTR
[1] “Overall significance (p-value) of association across all time-points = 6.16163643056273e-13”
[1] “Akaike Information Criterion (AIC) = 9488.65349190544”
| Estimate | Std. Error | z value | Pr(>|z|) | |
|---|---|---|---|---|
| (Intercept) | -3.2602196 | 0.2399376 | -13.5877795 | 0.000000 |
| CellLine2AE8iCTR | -0.1912228 | 0.1934659 | -0.9884056 | 0.322954 |
| Timepoint | 0.0849133 | 0.0037720 | 22.5112881 | 0.000000 |
| CellLine2AE8iCTR:Timepoint | 0.0833986 | 0.0113016 | 7.3793682 | 0.000000 |
| OR | Time | lower | upper | lower99 | upper99 | pvalue | Reference | Compare |
|---|---|---|---|---|---|---|---|---|
| 0.8259486 | 0 | 0.5652903 | 1.206798 | 0.5018784 | 1.359276 | 0.3229540 | 0YX7iCTR | 2AE8iCTR |
| 0.8977854 | 1 | 0.6182802 | 1.303646 | 0.5499937 | 1.465505 | 0.5709868 | 0YX7iCTR | 2AE8iCTR |
| 0.9758703 | 2 | 0.6754055 | 1.410002 | 0.6017479 | 1.582594 | 0.8964976 | 0YX7iCTR | 2AE8iCTR |
| 1.0607466 | 3 | 0.7368642 | 1.526989 | 0.6572651 | 1.711917 | 0.7510434 | 0YX7iCTR | 2AE8iCTR |
| 1.1530050 | 4 | 0.8028545 | 1.655867 | 0.7166599 | 1.855023 | 0.4407359 | 0YX7iCTR | 2AE8iCTR |
| 1.2532876 | 5 | 0.8735777 | 1.798042 | 0.7800411 | 2.013650 | 0.2201868 | 0YX7iCTR | 2AE8iCTR |
| 1.3622923 | 6 | 0.9492411 | 1.955078 | 0.8475144 | 2.189745 | 0.0934691 | 0YX7iCTR | 2AE8iCTR |
| 1.4807776 | 7 | 1.0300621 | 2.128709 | 0.9191875 | 2.385479 | 0.0340103 | 0YX7iCTR | 2AE8iCTR |
| 1.6095682 | 8 | 1.1162728 | 2.320857 | 0.9951743 | 2.603272 | 0.0108003 | 0YX7iCTR | 2AE8iCTR |
| 1.7495603 | 9 | 1.2081240 | 2.533648 | 1.0756004 | 2.845817 | 0.0030689 | 0YX7iCTR | 2AE8iCTR |
| 1.9017283 | 10 | 1.3058896 | 2.769431 | 1.1606068 | 3.116103 | 0.0008033 | 0YX7iCTR | 2AE8iCTR |
| 2.0671311 | 11 | 1.4098701 | 3.030798 | 1.2503542 | 3.417456 | 0.0001997 | 0YX7iCTR | 2AE8iCTR |
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 1.361475 | 5.5 | 0.9409777 | 1.969989 | 0.838002 | 2.212153 |
First half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 1.027774 | 2.5 | 0.7120454 | 1.483557 | 0.6345977 | 1.664661 |
Second half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 1.695176 | 8.5 | 1.16991 | 2.45642 | 1.041406 | 2.759645 |
Odds Ratio Comparing: 0YX7iCTR vs 6ZLDiALS
[1] “Overall significance (p-value) of association across all time-points = 5.2578473916536e-19”
[1] “Akaike Information Criterion (AIC) = 13083.6279592624”
| Estimate | Std. Error | z value | Pr(>|z|) | |
|---|---|---|---|---|
| (Intercept) | -3.0651628 | 0.2508875 | -12.217279 | 0 |
| CellLine6ZLDiALS | 0.9670393 | 0.1126167 | 8.586994 | 0 |
| Timepoint | 0.0850175 | 0.0037729 | 22.533674 | 0 |
| CellLine6ZLDiALS:Timepoint | -0.0376201 | 0.0058514 | -6.429209 | 0 |
| OR | Time | lower | upper | lower99 | upper99 | pvalue | Reference | Compare |
|---|---|---|---|---|---|---|---|---|
| 2.630146 | 0 | 2.109204 | 3.279753 | 1.968066 | 3.514957 | 0e+00 | 0YX7iCTR | 6ZLDiALS |
| 2.533037 | 1 | 2.037218 | 3.149530 | 1.902624 | 3.372331 | 0e+00 | 0YX7iCTR | 6ZLDiALS |
| 2.439514 | 2 | 1.966563 | 3.026209 | 1.837976 | 3.237926 | 0e+00 | 0YX7iCTR | 6ZLDiALS |
| 2.349444 | 3 | 1.897237 | 2.909435 | 1.774147 | 3.111291 | 0e+00 | 0YX7iCTR | 6ZLDiALS |
| 2.262700 | 4 | 1.829248 | 2.798861 | 1.711173 | 2.991988 | 0e+00 | 0YX7iCTR | 6ZLDiALS |
| 2.179158 | 5 | 1.762611 | 2.694145 | 1.649102 | 2.879585 | 0e+00 | 0YX7iCTR | 6ZLDiALS |
| 2.098701 | 6 | 1.697349 | 2.594954 | 1.587990 | 2.773660 | 0e+00 | 0YX7iCTR | 6ZLDiALS |
| 2.021214 | 7 | 1.633494 | 2.500961 | 1.527900 | 2.673804 | 0e+00 | 0YX7iCTR | 6ZLDiALS |
| 1.946588 | 8 | 1.571079 | 2.411849 | 1.468902 | 2.579616 | 0e+00 | 0YX7iCTR | 6ZLDiALS |
| 1.874717 | 9 | 1.510141 | 2.327310 | 1.411069 | 2.490712 | 0e+00 | 0YX7iCTR | 6ZLDiALS |
| 1.805500 | 10 | 1.450718 | 2.247047 | 1.354471 | 2.406719 | 1e-07 | 0YX7iCTR | 6ZLDiALS |
| 1.738839 | 11 | 1.392846 | 2.170778 | 1.299179 | 2.327286 | 1e-06 | 0YX7iCTR | 6ZLDiALS |
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 2.15663 | 5.5 | 1.738142 | 2.675903 | 1.624383 | 2.863323 |
First half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 2.399 | 2.5 | 1.93368 | 2.976322 | 1.807181 | 3.18468 |
Second half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 1.91426 | 8.5 | 1.542605 | 2.375483 | 1.441585 | 2.541966 |
Odds Ratio Comparing: 0YX7iCTR vs BUUiALS
[1] “Overall significance (p-value) of association across all time-points = 3.44019720917551e-11”
[1] “Akaike Information Criterion (AIC) = 10706.1186709188”
| Estimate | Std. Error | z value | Pr(>|z|) | |
|---|---|---|---|---|
| (Intercept) | -3.2029269 | 0.2430365 | -13.178787 | 0e+00 |
| CellLineBUUiALS | 0.6897611 | 0.1060444 | 6.504457 | 0e+00 |
| Timepoint | 0.0849259 | 0.0037700 | 22.526594 | 0e+00 |
| CellLineBUUiALS:Timepoint | -0.0343269 | 0.0069723 | -4.923319 | 9e-07 |
| OR | Time | lower | upper | lower99 | upper99 | pvalue | Reference | Compare |
|---|---|---|---|---|---|---|---|---|
| 1.993239 | 0 | 1.619171 | 2.453727 | 1.516943 | 2.619086 | 0.0000000 | 0YX7iCTR | BUUiALS |
| 1.925979 | 1 | 1.570612 | 2.361750 | 1.473241 | 2.517845 | 0.0000000 | 0YX7iCTR | BUUiALS |
| 1.860988 | 2 | 1.522205 | 2.275169 | 1.429190 | 2.423243 | 0.0000000 | 0YX7iCTR | BUUiALS |
| 1.798190 | 3 | 1.473970 | 2.193725 | 1.384826 | 2.334940 | 0.0000000 | 0YX7iCTR | BUUiALS |
| 1.737511 | 4 | 1.425945 | 2.117153 | 1.340211 | 2.252588 | 0.0000000 | 0YX7iCTR | BUUiALS |
| 1.678880 | 5 | 1.378187 | 2.045177 | 1.295430 | 2.175830 | 0.0000003 | 0YX7iCTR | BUUiALS |
| 1.622227 | 6 | 1.330770 | 1.977516 | 1.250592 | 2.104298 | 0.0000017 | 0YX7iCTR | BUUiALS |
| 1.567486 | 7 | 1.283784 | 1.913882 | 1.205824 | 2.037620 | 0.0000102 | 0YX7iCTR | BUUiALS |
| 1.514592 | 8 | 1.237327 | 1.853988 | 1.161265 | 1.975422 | 0.0000571 | 0YX7iCTR | BUUiALS |
| 1.463483 | 9 | 1.191503 | 1.797547 | 1.117062 | 1.917335 | 0.0002831 | 0YX7iCTR | BUUiALS |
| 1.414098 | 10 | 1.146417 | 1.744282 | 1.073361 | 1.863002 | 0.0012112 | 0YX7iCTR | BUUiALS |
| 1.366380 | 11 | 1.102170 | 1.693928 | 1.030305 | 1.812080 | 0.0044090 | 0YX7iCTR | BUUiALS |
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 1.661921 | 5.5 | 1.356838 | 2.035654 | 1.273188 | 2.169441 |
First half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 1.832464 | 2.5 | 1.498348 | 2.241117 | 1.40664 | 2.387256 |
Second half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 1.491378 | 8.5 | 1.215328 | 1.83019 | 1.139735 | 1.951626 |
Odds Ratio Comparing: 2AE8iCTR vs 0YX7iCTR
[1] “Overall significance (p-value) of association across all time-points = 6.16163640805156e-13”
[1] “Akaike Information Criterion (AIC) = 9488.65349189813”
| Estimate | Std. Error | z value | Pr(>|z|) | |
|---|---|---|---|---|
| (Intercept) | -3.4514499 | 0.2765890 | -12.4786235 | 0.0000000 |
| CellLine0YX7iCTR | 0.1912417 | 0.1934676 | 0.9884947 | 0.3229104 |
| Timepoint | 0.1683118 | 0.0106549 | 15.7967040 | 0.0000000 |
| CellLine0YX7iCTR:Timepoint | -0.0833985 | 0.0113016 | -7.3793624 | 0.0000000 |
| OR | Time | lower | upper | lower99 | upper99 | pvalue | Reference | Compare |
|---|---|---|---|---|---|---|---|---|
| 1.2107521 | 0 | 0.8286521 | 1.7690422 | 0.7356967 | 1.9925612 | 0.3229104 | 2AE8iCTR | 0YX7iCTR |
| 1.1138731 | 1 | 0.7670911 | 1.6174261 | 0.6823683 | 1.8182456 | 0.5709224 | 2AE8iCTR | 0YX7iCTR |
| 1.0247459 | 2 | 0.7092301 | 1.4806254 | 0.6318831 | 1.6618646 | 0.8964183 | 2AE8iCTR | 0YX7iCTR |
| 0.9427502 | 3 | 0.6548939 | 1.3571328 | 0.5841489 | 1.5214921 | 0.7511236 | 2AE8iCTR | 0YX7iCTR |
| 0.8673155 | 4 | 0.6039226 | 1.2455838 | 0.5390848 | 1.3953950 | 0.4408018 | 2AE8iCTR | 0YX7iCTR |
| 0.7979168 | 5 | 0.5561692 | 1.1447437 | 0.4966179 | 1.2820141 | 0.2202304 | 2AE8iCTR | 0YX7iCTR |
| 0.7340710 | 6 | 0.5114967 | 1.0534970 | 0.4566810 | 1.1799488 | 0.0934925 | 2AE8iCTR | 0YX7iCTR |
| 0.6753339 | 7 | 0.4697759 | 0.9708372 | 0.4192093 | 1.0879431 | 0.0340207 | 2AE8iCTR | 0YX7iCTR |
| 0.6212967 | 8 | 0.4308822 | 0.8958586 | 0.3841377 | 1.0048728 | 0.0108043 | 2AE8iCTR | 0YX7iCTR |
| 0.5715833 | 9 | 0.3946942 | 0.8277483 | 0.3513984 | 0.9297352 | 0.0030702 | 2AE8iCTR | 0YX7iCTR |
| 0.5258477 | 10 | 0.3610910 | 0.7657788 | 0.3209186 | 0.8616385 | 0.0008037 | 2AE8iCTR | 0YX7iCTR |
| 0.4837717 | 11 | 0.3299516 | 0.7093012 | 0.2926199 | 0.7997921 | 0.0001998 | 2AE8iCTR | 0YX7iCTR |
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 0.7974382 | 5.5 | 0.5514876 | 1.153131 | 0.4912304 | 1.294625 |
First half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 0.9928923 | 2.5 | 0.6866598 | 1.435759 | 0.6116333 | 1.611929 |
Second half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 0.601984 | 8.5 | 0.4163153 | 0.8705035 | 0.3708275 | 0.9773218 |
Odds Ratio Comparing: 2AE8iCTR vs 6ZLDiALS
[1] “Overall significance (p-value) of association across all time-points = 3.61193653158207e-30”
[1] “Akaike Information Criterion (AIC) = 8303.77924786639”
| Estimate | Std. Error | z value | Pr(>|z|) | |
|---|---|---|---|---|
| (Intercept) | -3.4414474 | 0.3857421 | -8.921627 | 0 |
| CellLine6ZLDiALS | 1.6001465 | 0.1978289 | 8.088539 | 0 |
| Timepoint | 0.1697374 | 0.0106753 | 15.900078 | 0 |
| CellLine6ZLDiALS:Timepoint | -0.1213207 | 0.0115804 | -10.476385 | 0 |
| OR | Time | lower | upper | lower99 | upper99 | pvalue | Reference | Compare |
|---|---|---|---|---|---|---|---|---|
| 4.953758 | 0 | 3.3615491 | 7.300122 | 2.9764674 | 8.244578 | 0.0000000 | 2AE8iCTR | 6ZLDiALS |
| 4.387790 | 1 | 2.9969141 | 6.424176 | 2.6590223 | 7.240520 | 0.0000000 | 2AE8iCTR | 6ZLDiALS |
| 3.886485 | 2 | 2.6684679 | 5.660463 | 2.3715048 | 6.369273 | 0.0000000 | 2AE8iCTR | 6ZLDiALS |
| 3.442453 | 3 | 2.3728998 | 4.994093 | 2.1114308 | 5.612537 | 0.0000000 | 2AE8iCTR | 6ZLDiALS |
| 3.049152 | 4 | 2.1072126 | 4.412146 | 1.8765346 | 4.954521 | 0.0000000 | 2AE8iCTR | 6ZLDiALS |
| 2.700786 | 5 | 1.8686868 | 3.903407 | 1.6647422 | 4.381607 | 0.0000001 | 2AE8iCTR | 6ZLDiALS |
| 2.392221 | 6 | 1.6548478 | 3.458155 | 1.4741458 | 3.882059 | 0.0000035 | 2AE8iCTR | 6ZLDiALS |
| 2.118909 | 7 | 1.4634369 | 3.067967 | 1.3029815 | 3.445772 | 0.0000699 | 2AE8iCTR | 6ZLDiALS |
| 1.876824 | 8 | 1.2923857 | 2.725554 | 1.1496103 | 3.064053 | 0.0009415 | 2AE8iCTR | 6ZLDiALS |
| 1.662396 | 9 | 1.1397946 | 2.424613 | 1.0125029 | 2.729435 | 0.0083021 | 2AE8iCTR | 6ZLDiALS |
| 1.472467 | 10 | 1.0039154 | 2.159703 | 0.8902276 | 2.435512 | 0.0477039 | 2AE8iCTR | 6ZLDiALS |
| 1.304238 | 11 | 0.8831371 | 1.926129 | 0.7814424 | 2.176790 | 0.1817884 | 2AE8iCTR | 6ZLDiALS |
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 2.770623 | 5.5 | 1.901104 | 4.038044 | 1.689218 | 4.544721 |
First half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 3.736737 | 2.5 | 2.562622 | 5.449068 | 2.276617 | 6.133839 |
Second half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 1.804509 | 8.5 | 1.239586 | 2.62702 | 1.101818 | 2.955603 |
Odds Ratio Comparing: 2AE8iCTR vs BUUiALS
[1] “Overall significance (p-value) of association across all time-points = 3.09303939006303e-21”
[1] “Akaike Information Criterion (AIC) = 5932.58526602009”
| Estimate | Std. Error | z value | Pr(>|z|) | |
|---|---|---|---|---|
| (Intercept) | -3.6157951 | 0.3537173 | -10.222274 | 0.0000000 |
| CellLineBUUiALS | 0.4669365 | 0.1675003 | 2.787676 | 0.0053088 |
| Timepoint | 0.1694058 | 0.0106679 | 15.879986 | 0.0000000 |
| CellLineBUUiALS:Timepoint | -0.1177776 | 0.0121743 | -9.674273 | 0.0000000 |
| OR | Time | lower | upper | lower99 | upper99 | pvalue | Reference | Compare |
|---|---|---|---|---|---|---|---|---|
| 1.5951001 | 0 | 1.1487059 | 2.2149659 | 1.0362654 | 2.4553018 | 0.0053088 | 2AE8iCTR | BUUiALS |
| 1.4178744 | 1 | 1.0294255 | 1.9529028 | 0.9310364 | 2.1592795 | 0.0325539 | 2AE8iCTR | BUUiALS |
| 1.2603396 | 2 | 0.9210486 | 1.7246169 | 0.8347275 | 1.9029634 | 0.1481707 | 2AE8iCTR | BUUiALS |
| 1.1203079 | 3 | 0.8226733 | 1.5256237 | 0.7467014 | 1.6808458 | 0.4708728 | 2AE8iCTR | BUUiALS |
| 0.9958347 | 4 | 0.7334902 | 1.3520108 | 0.6663880 | 1.4881521 | 0.9786543 | 2AE8iCTR | BUUiALS |
| 0.8851911 | 5 | 0.6527698 | 1.2003671 | 0.5932732 | 1.3207462 | 0.4325869 | 2AE8iCTR | BUUiALS |
| 0.7868408 | 6 | 0.5798494 | 1.0677228 | 0.5268870 | 1.1750497 | 0.1237418 | 2AE8iCTR | BUUiALS |
| 0.6994178 | 7 | 0.5141209 | 0.9514986 | 0.4667910 | 1.0479751 | 0.0228103 | 2AE8iCTR | BUUiALS |
| 0.6217081 | 8 | 0.4550192 | 0.8494608 | 0.4125678 | 0.9368666 | 0.0028403 | 2AE8iCTR | BUUiALS |
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 1.042513 | 4 | 0.7619003 | 1.426574 | 0.6905153 | 1.574131 |
First half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 1.277891 | 2 | 0.9310687 | 1.754024 | 0.8430237 | 1.937309 |
Second half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 0.7482895 | 6.5 | 0.5504398 | 1.017262 | 0.4998798 | 1.120159 |
Odds Ratio Comparing: 6ZLDiALS vs 0YX7iCTR
[1] “Overall significance (p-value) of association across all time-points = 5.25784739283953e-19”
[1] “Akaike Information Criterion (AIC) = 13083.6279592628”
| Estimate | Std. Error | z value | Pr(>|z|) | |
|---|---|---|---|---|
| (Intercept) | -2.0981285 | 0.2540189 | -8.259734 | 0 |
| CellLine0YX7iCTR | -0.9670357 | 0.1126152 | -8.587077 | 0 |
| Timepoint | 0.0473974 | 0.0044779 | 10.584657 | 0 |
| CellLine0YX7iCTR:Timepoint | 0.0376200 | 0.0058514 | 6.429191 | 0 |
| OR | Time | lower | upper | lower99 | upper99 | pvalue | Reference | Compare |
|---|---|---|---|---|---|---|---|---|
| 0.3802084 | 0 | 0.3049030 | 0.4741129 | 0.2845006 | 0.5081130 | 0e+00 | 6ZLDiALS | 0YX7iCTR |
| 0.3947843 | 1 | 0.3175097 | 0.4908658 | 0.2965329 | 0.5255897 | 0e+00 | 6ZLDiALS | 0YX7iCTR |
| 0.4099190 | 2 | 0.3304485 | 0.5085016 | 0.3088418 | 0.5440765 | 0e+00 | 6ZLDiALS | 0YX7iCTR |
| 0.4256339 | 3 | 0.3437114 | 0.5270824 | 0.3214121 | 0.5636508 | 0e+00 | 6ZLDiALS | 0YX7iCTR |
| 0.4419512 | 4 | 0.3572902 | 0.5466729 | 0.3342281 | 0.5843940 | 0e+00 | 6ZLDiALS | 0YX7iCTR |
| 0.4588941 | 5 | 0.3711773 | 0.5673404 | 0.3472745 | 0.6063902 | 0e+00 | 6ZLDiALS | 0YX7iCTR |
| 0.4764866 | 6 | 0.3853653 | 0.5891539 | 0.3605366 | 0.6297266 | 0e+00 | 6ZLDiALS | 0YX7iCTR |
| 0.4947534 | 7 | 0.3998482 | 0.6121847 | 0.3740011 | 0.6544926 | 0e+00 | 6ZLDiALS | 0YX7iCTR |
| 0.5137206 | 8 | 0.4146216 | 0.6365053 | 0.3876567 | 0.6807799 | 0e+00 | 6ZLDiALS | 0YX7iCTR |
| 0.5334149 | 9 | 0.4296826 | 0.6621898 | 0.4014938 | 0.7086821 | 0e+00 | 6ZLDiALS | 0YX7iCTR |
| 0.5538642 | 10 | 0.4450304 | 0.6893138 | 0.4155054 | 0.7382950 | 1e-07 | 6ZLDiALS | 0YX7iCTR |
| 0.5750975 | 11 | 0.4606660 | 0.7179542 | 0.4296870 | 0.7697162 | 1e-06 | 6ZLDiALS | 0YX7iCTR |
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 0.4715607 | 5.5 | 0.3800212 | 0.5851565 | 0.3551392 | 0.6261589 |
First half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 0.4185652 | 2.5 | 0.3375067 | 0.519096 | 0.315465 | 0.555369 |
Second half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 0.5245562 | 8.5 | 0.4225357 | 0.651217 | 0.3948134 | 0.6969487 |
Odds Ratio Comparing: 6ZLDiALS vs 2AE8iCTR
[1] “Overall significance (p-value) of association across all time-points = 3.61193653177261e-30”
[1] “Akaike Information Criterion (AIC) = 8303.77924786649”
| Estimate | Std. Error | z value | Pr(>|z|) | |
|---|---|---|---|---|
| (Intercept) | -1.8413045 | 0.3571453 | -5.155617 | 3e-07 |
| CellLine2AE8iCTR | -1.6001437 | 0.1978286 | -8.088534 | 0e+00 |
| Timepoint | 0.0484169 | 0.0044909 | 10.781068 | 0e+00 |
| CellLine2AE8iCTR:Timepoint | 0.1213203 | 0.0115804 | 10.476346 | 0e+00 |
| OR | Time | lower | upper | lower99 | upper99 | pvalue | Reference | Compare |
|---|---|---|---|---|---|---|---|---|
| 0.2018675 | 0 | 0.1369845 | 0.2974826 | 0.1212922 | 0.3359695 | 0.0000000 | 6ZLDiALS | 2AE8iCTR |
| 0.2279057 | 1 | 0.1556624 | 0.3336772 | 0.1381120 | 0.3760787 | 0.0000000 | 6ZLDiALS | 2AE8iCTR |
| 0.2573024 | 2 | 0.1766644 | 0.3747474 | 0.1570042 | 0.4216737 | 0.0000000 | 6ZLDiALS | 2AE8iCTR |
| 0.2904910 | 3 | 0.2002369 | 0.4214257 | 0.1781729 | 0.4736129 | 0.0000000 | 6ZLDiALS | 2AE8iCTR |
| 0.3279604 | 4 | 0.2266474 | 0.4745608 | 0.2018362 | 0.5328974 | 0.0000000 | 6ZLDiALS | 2AE8iCTR |
| 0.3702628 | 5 | 0.2561867 | 0.5351352 | 0.2282271 | 0.6006936 | 0.0000001 | 6ZLDiALS | 2AE8iCTR |
| 0.4180217 | 6 | 0.2891717 | 0.6042850 | 0.2575955 | 0.6783587 | 0.0000035 | 6ZLDiALS | 2AE8iCTR |
| 0.4719408 | 7 | 0.3259488 | 0.6833224 | 0.2902109 | 0.7674699 | 0.0000699 | 6ZLDiALS | 2AE8iCTR |
| 0.5328148 | 8 | 0.3668979 | 0.7737619 | 0.3263652 | 0.8698588 | 0.0009415 | 6ZLDiALS | 2AE8iCTR |
| 0.6015407 | 9 | 0.4124367 | 0.8773497 | 0.3663760 | 0.9876497 | 0.0083019 | 6ZLDiALS | 2AE8iCTR |
| 0.6791313 | 10 | 0.4630261 | 0.9960978 | 0.4105910 | 1.1233058 | 0.0477028 | 6ZLDiALS | 2AE8iCTR |
| 0.7667300 | 11 | 0.5191754 | 1.1323242 | 0.4593916 | 1.2796815 | 0.1817847 | 6ZLDiALS | 2AE8iCTR |
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 0.4288308 | 5.5 | 0.2940866 | 0.6253475 | 0.2612646 | 0.7039375 |
First half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 0.2792983 | 2.5 | 0.1920637 | 0.4061715 | 0.1707741 | 0.456821 |
Second half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 0.5783632 | 8.5 | 0.3961094 | 0.8445235 | 0.351755 | 0.9510541 |
Odds Ratio Comparing: 6ZLDiALS vs BUUiALS
[1] “Overall significance (p-value) of association across all time-points = 5.70943410837821e-12”
[1] “Akaike Information Criterion (AIC) = 9452.64528449605”
| Estimate | Std. Error | z value | Pr(>|z|) | |
|---|---|---|---|---|
| (Intercept) | -1.9439756 | 0.2980253 | -6.5228550 | 0.000000 |
| CellLineBUUiALS | -0.9051310 | 0.1185671 | -7.6339144 | 0.000000 |
| Timepoint | 0.0482936 | 0.0044870 | 10.7631044 | 0.000000 |
| CellLineBUUiALS:Timepoint | 0.0033473 | 0.0073890 | 0.4530052 | 0.650545 |
| OR | Time | lower | upper | lower99 | upper99 | pvalue | Reference | Compare |
|---|---|---|---|---|---|---|---|---|
| 0.4044889 | 0 | 0.3206124 | 0.5103087 | 0.2980657 | 0.5489100 | 0 | 6ZLDiALS | BUUiALS |
| 0.4058451 | 1 | 0.3229440 | 0.5100273 | 0.3006009 | 0.5479366 | 0 | 6ZLDiALS | BUUiALS |
| 0.4072058 | 2 | 0.3250115 | 0.5101869 | 0.3028135 | 0.5475865 | 0 | 6ZLDiALS | BUUiALS |
| 0.4085711 | 3 | 0.3267980 | 0.5108060 | 0.3046821 | 0.5478839 | 0 | 6ZLDiALS | BUUiALS |
| 0.4099410 | 4 | 0.3282903 | 0.5118995 | 0.3061895 | 0.5488485 | 0 | 6ZLDiALS | BUUiALS |
| 0.4113155 | 5 | 0.3294794 | 0.5134781 | 0.3073243 | 0.5504948 | 0 | 6ZLDiALS | BUUiALS |
| 0.4126946 | 6 | 0.3303606 | 0.5155483 | 0.3080809 | 0.5528315 | 0 | 6ZLDiALS | BUUiALS |
| 0.4140783 | 7 | 0.3309344 | 0.5181113 | 0.3084599 | 0.5558610 | 0 | 6ZLDiALS | BUUiALS |
| 0.4154667 | 8 | 0.3312057 | 0.5211642 | 0.3084681 | 0.5595799 | 0 | 6ZLDiALS | BUUiALS |
| 0.4168597 | 9 | 0.3311839 | 0.5246994 | 0.3081176 | 0.5639794 | 0 | 6ZLDiALS | BUUiALS |
| 0.4182573 | 10 | 0.3308817 | 0.5287062 | 0.3074253 | 0.5690463 | 0 | 6ZLDiALS | BUUiALS |
| 0.4196597 | 11 | 0.3303149 | 0.5331708 | 0.3064116 | 0.5747637 | 0 | 6ZLDiALS | BUUiALS |
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 0.412032 | 5.5 | 0.3281681 | 0.5173422 | 0.3055533 | 0.5556435 |
First half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 0.4078946 | 2.5 | 0.3255226 | 0.5111177 | 0.3032793 | 0.5486101 |
Second half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 0.4161694 | 8.5 | 0.3308135 | 0.5235667 | 0.3078272 | 0.562677 |
Odds Ratio Comparing: BUUiALS vs 0YX7iCTR
[1] “Overall significance (p-value) of association across all time-points = 3.44019720288028e-11”
[1] “Akaike Information Criterion (AIC) = 10706.1186709152”
| Estimate | Std. Error | z value | Pr(>|z|) | |
|---|---|---|---|---|
| (Intercept) | -2.5131782 | 0.2481378 | -10.128157 | 0e+00 |
| CellLine0YX7iCTR | -0.6897571 | 0.1060433 | -6.504483 | 0e+00 |
| Timepoint | 0.0505987 | 0.0058689 | 8.621473 | 0e+00 |
| CellLine0YX7iCTR:Timepoint | 0.0343270 | 0.0069723 | 4.923346 | 9e-07 |
| OR | Time | lower | upper | lower99 | upper99 | pvalue | Reference | Compare |
|---|---|---|---|---|---|---|---|---|
| 0.5016979 | 0 | 0.4075458 | 0.6176013 | 0.3818152 | 0.6592216 | 0.0000000 | BUUiALS | 0YX7iCTR |
| 0.5192187 | 1 | 0.4234174 | 0.6366959 | 0.3971677 | 0.6787765 | 0.0000000 | BUUiALS | 0YX7iCTR |
| 0.5373514 | 2 | 0.4395305 | 0.6569432 | 0.4126730 | 0.6996982 | 0.0000000 | BUUiALS | 0YX7iCTR |
| 0.5561174 | 3 | 0.4558485 | 0.6784415 | 0.4282795 | 0.7221138 | 0.0000000 | BUUiALS | 0YX7iCTR |
| 0.5755386 | 4 | 0.4723355 | 0.7012912 | 0.4439368 | 0.7461530 | 0.0000000 | BUUiALS | 0YX7iCTR |
| 0.5956382 | 5 | 0.4889584 | 0.7255932 | 0.4595978 | 0.7719463 | 0.0000003 | BUUiALS | 0YX7iCTR |
| 0.6164397 | 6 | 0.5056882 | 0.7514470 | 0.4752211 | 0.7996233 | 0.0000017 | BUUiALS | 0YX7iCTR |
| 0.6379676 | 7 | 0.5225016 | 0.7789501 | 0.4907721 | 0.8293110 | 0.0000102 | BUUiALS | 0YX7iCTR |
| 0.6602473 | 8 | 0.5393815 | 0.8081972 | 0.5062245 | 0.8611328 | 0.0000571 | BUUiALS | 0YX7iCTR |
| 0.6833052 | 9 | 0.5563174 | 0.8392798 | 0.5215609 | 0.8952089 | 0.0002831 | BUUiALS | 0YX7iCTR |
| 0.7071683 | 10 | 0.5733056 | 0.8722869 | 0.5367719 | 0.9316564 | 0.0012114 | BUUiALS | 0YX7iCTR |
| 0.7318647 | 11 | 0.5903480 | 0.9073054 | 0.5518559 | 0.9705902 | 0.0044095 | BUUiALS | 0YX7iCTR |
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 0.6102129 | 5.5 | 0.4979315 | 0.747836 | 0.4671564 | 0.7971193 |
First half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 0.5475937 | 2.5 | 0.4479393 | 0.6694277 | 0.4205783 | 0.7129849 |
Second half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 0.6728321 | 8.5 | 0.5479237 | 0.8262444 | 0.5137344 | 0.8812538 |
Odds Ratio Comparing: BUUiALS vs 2AE8iCTR
[1] “Overall significance (p-value) of association across all time-points = 3.09303938876478e-21”
[1] “Akaike Information Criterion (AIC) = 5932.58526601925”
| Estimate | Std. Error | z value | Pr(>|z|) | |
|---|---|---|---|---|
| (Intercept) | -3.1488475 | 0.3363344 | -9.362252 | 0.0000000 |
| CellLine2AE8iCTR | -0.4669384 | 0.1674996 | -2.787699 | 0.0053084 |
| Timepoint | 0.0516283 | 0.0058736 | 8.789888 | 0.0000000 |
| CellLine2AE8iCTR:Timepoint | 0.1177777 | 0.0121743 | 9.674285 | 0.0000000 |
| OR | Time | lower | upper | lower99 | upper99 | pvalue | Reference | Compare |
|---|---|---|---|---|---|---|---|---|
| 0.6269187 | 0 | 0.4514740 | 0.8705421 | 0.4072819 | 0.9650002 | 0.0053084 | BUUiALS | 2AE8iCTR |
| 0.7052798 | 1 | 0.5120580 | 0.9714126 | 0.4631174 | 1.0740681 | 0.0325523 | BUUiALS | 2AE8iCTR |
| 0.7934355 | 2 | 0.5798386 | 1.0857158 | 0.5254961 | 1.1979917 | 0.1481660 | BUUiALS | 2AE8iCTR |
| 0.8926102 | 3 | 0.6554692 | 1.2155459 | 0.5949384 | 1.3392192 | 0.4708644 | BUUiALS | 2AE8iCTR |
| 1.0041811 | 4 | 0.7396386 | 1.3633411 | 0.6719741 | 1.5006228 | 0.9786629 | BUUiALS | 2AE8iCTR |
| 1.1296977 | 5 | 0.8330779 | 1.5319297 | 0.7571474 | 1.6855592 | 0.4325918 | BUUiALS | 2AE8iCTR |
| 1.2709031 | 6 | 0.9365719 | 1.7245815 | 0.8510273 | 1.8979350 | 0.1237433 | BUUiALS | 2AE8iCTR |
| 1.4297583 | 7 | 1.0509728 | 1.9450634 | 0.9542205 | 2.1422812 | 0.0228106 | BUUiALS | 2AE8iCTR |
| 1.6084694 | 8 | 1.1772163 | 2.1977049 | 1.0673871 | 2.4238386 | 0.0028404 | BUUiALS | 2AE8iCTR |
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 1.05125 | 4 | 0.7707019 | 1.433982 | 0.6991767 | 1.580724 |
First half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 0.8044851 | 2 | 0.5876957 | 1.101311 | 0.5325616 | 1.21538 |
Second half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 1.359707 | 6.5 | 0.9994597 | 1.84982 | 0.9074456 | 2.037403 |
Odds Ratio Comparing: BUUiALS vs 6ZLDiALS
[1] “Overall significance (p-value) of association across all time-points = 5.70943411563241e-12”
[1] “Akaike Information Criterion (AIC) = 9452.64528449859”
| Estimate | Std. Error | z value | Pr(>|z|) | |
|---|---|---|---|---|
| (Intercept) | -2.8491044 | 0.3018659 | -9.4383105 | 0.0000000 |
| CellLine6ZLDiALS | 0.9051247 | 0.1185670 | 7.6338666 | 0.0000000 |
| Timepoint | 0.0516408 | 0.0058742 | 8.7910787 | 0.0000000 |
| CellLine6ZLDiALS:Timepoint | -0.0033471 | 0.0073890 | -0.4529845 | 0.6505599 |
| OR | Time | lower | upper | lower99 | upper99 | pvalue | Reference | Compare |
|---|---|---|---|---|---|---|---|---|
| 2.472240 | 0 | 1.959586 | 3.119011 | 1.821781 | 3.354943 | 0 | BUUiALS | 6ZLDiALS |
| 2.463979 | 1 | 1.960668 | 3.096493 | 1.825018 | 3.326649 | 0 | BUUiALS | 6ZLDiALS |
| 2.455746 | 2 | 1.960055 | 3.076795 | 1.826185 | 3.302342 | 0 | BUUiALS | 6ZLDiALS |
| 2.447540 | 3 | 1.957680 | 3.059976 | 1.825194 | 3.282090 | 0 | BUUiALS | 6ZLDiALS |
| 2.439361 | 4 | 1.953498 | 3.046066 | 1.821987 | 3.265932 | 0 | BUUiALS | 6ZLDiALS |
| 2.431210 | 5 | 1.947492 | 3.035074 | 1.816538 | 3.253873 | 0 | BUUiALS | 6ZLDiALS |
| 2.423086 | 6 | 1.939673 | 3.026979 | 1.808860 | 3.245882 | 0 | BUUiALS | 6ZLDiALS |
| 2.414990 | 7 | 1.930077 | 3.021731 | 1.799002 | 3.241894 | 0 | BUUiALS | 6ZLDiALS |
| 2.406920 | 8 | 1.918772 | 3.019256 | 1.787046 | 3.241809 | 0 | BUUiALS | 6ZLDiALS |
| 2.398877 | 9 | 1.905844 | 3.019455 | 1.773106 | 3.245497 | 0 | BUUiALS | 6ZLDiALS |
| 2.390861 | 10 | 1.891401 | 3.022213 | 1.757319 | 3.252807 | 0 | BUUiALS | 6ZLDiALS |
| 2.382872 | 11 | 1.875563 | 3.027400 | 1.739838 | 3.263568 | 0 | BUUiALS | 6ZLDiALS |
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 2.427307 | 5.5 | 1.933359 | 3.047537 | 1.800156 | 3.273107 |
First half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 2.45168 | 2.5 | 1.956496 | 3.072236 | 1.822784 | 3.297638 |
Second half Mean
| OR | Time | lower | upper | lower99 | upper99 |
|---|---|---|---|---|---|
| 2.402934 | 8.5 | 1.910222 | 3.022839 | 1.777529 | 3.248576 |
[1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
Odds Ratio Combined
Reference condition: 0YX7iCTR
Odds Ratio Combined
Reference condition: 2AE8iCTR
Odds Ratio Combined
Reference condition: 6ZLDiALS
Odds Ratio Combined
Reference condition: BUUiALS
] NULL
[[2]] NULL
[[3]] NULL
[[4]] NULL